Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20393
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormo...    29   2.4  

>AF067622-5|AAC17544.1|  371|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 15 protein.
          Length = 371

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +3

Query: 87  DLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYK-VGKFDKELNGS** 263
           DL  ++ + N+K S +V K  TQ + +  W L  +  +I   L  + +G  D E      
Sbjct: 150 DLTLVEIVKNNKKSRMVTKSATQMITVHDWTLLGLYVTIEMFLSMEFMGSIDNEDK---- 205

Query: 264 AIKILVYFRMLALYAMIMRIYISKFKRITS 353
            I +  +     +    MR Y SK  R+T+
Sbjct: 206 IILLRNFSFKSVILNSAMRSYSSKVDRVTT 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,087,711
Number of Sequences: 27780
Number of extensions: 232952
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)