Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20393
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ...    29   2.3  
At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containi...    28   4.0  
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR...    27   6.9  
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas...    27   6.9  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    27   9.1  

>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
            alpha-glucan phosphorylase, L isozyme 1 precursor
            GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
            691-695 (1989))
          Length = 962

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 272  NPCILQNVGTIRNDNADIHFQV-QADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNV 448
            N C+L  +GT+   N +I  +V + ++F+F    GAK   +VN +          R    
Sbjct: 812  NGCVL--IGTLDGANVEIREEVGEENFFLF----GAKADQIVNLR--------KERAEGK 857

Query: 449  VIPQPTEEPGDKWIGSSV 502
             +P PT E   K++GS V
Sbjct: 858  FVPDPTFEEVKKFVGSGV 875


>At2g17140.1 68415.m01979 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 903

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 33  HGYLTIWKLIIMSKIIKFDLRELKQLANDKNSCLVVKKI-TQNLALQPWCLGNIKESITN 209
           H  L  +  +I+   IK  + E+  L ++     +   I T N A+Q  C G   E  TN
Sbjct: 591 HKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATN 650

Query: 210 LLDYKVGK 233
           LLD  + K
Sbjct: 651 LLDEMMQK 658


>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 126 SCLVVKKITQNLALQPWCLGNIKE 197
           S +V+  +++N AL PWCL  + E
Sbjct: 103 SRIVIVVLSRNYALSPWCLDELVE 126


>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
           (GSA 2) / glutamate-1-semialdehyde aminotransferase 2
           (GSA-AT 2) identical to GSA2 [SP|Q42522]
          Length = 472

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 142 FTTKQEFLSFANCFNSRRSNFMI 74
           FT KQ+F+ F  C++   ++F++
Sbjct: 176 FTGKQKFIKFEGCYHGHANSFLV 198


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 323 YPHYHCV*CQHSEVYKDFYSLLRTVQLFIK 234
           Y  + C  CQ S++  D+Y  LR+ Q+F K
Sbjct: 138 YLQFTCGACQLSKIGTDYYICLRSDQMFHK 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,306,678
Number of Sequences: 28952
Number of extensions: 207789
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)