Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20392
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   0.90 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.8  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   6.3  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    21   8.4  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   8.4  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 79  RVDLSSALKRVRSEGDNGTATDDDKDVGLRPVCLPSSGLS 198
           RV L  A    + +G N  + DD++ +GL+      +GL+
Sbjct: 296 RVWLDDAQVPYKYDGTNWVSYDDEQSIGLKAKYAKDNGLA 335


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 599  FQIFVGGF*LIVQMTNCTPLFYFLVP 676
            F + VG F    Q+ N T  +Y ++P
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIP 953


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 599  FQIFVGGF*LIVQMTNCTPLFYFLVP 676
            F + VG F    Q+ N T  +Y ++P
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIP 953


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 599  FQIFVGGF*LIVQMTNCTPLFYFLVP 676
            F + VG F    Q+ N T  +Y ++P
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIP 953


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 599  FQIFVGGF*LIVQMTNCTPLFYFLVP 676
            F + VG F    Q+ N T  +Y ++P
Sbjct: 928  FLMLVGAFVAAFQIDNWTSFYYNIIP 953


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 366 GGRDACQGDSGG 401
           GGRD  +GD GG
Sbjct: 97  GGRDGDRGDGGG 108


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 348 KSYYLLSDHRSLYDILHLSQSVLSPPVMHWIRATFL 241
           K  +L++ H++L  +     S+ S  ++ WI  TF+
Sbjct: 229 KIKHLVNLHKNLVKVAKDHNSLYSLHLLLWITVTFI 264


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 249 WLVSNALQEVKVPIVTNEECRK 314
           W  SNA + + +  +T+E C +
Sbjct: 330 WAFSNACEVMAIVWITSETCEE 351


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 249 WLVSNALQEVKVPIVTNEECRK 314
           W  SNA + + +  +T+E C +
Sbjct: 330 WAFSNACEVMAIVWITSETCEE 351


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,392
Number of Sequences: 336
Number of extensions: 4353
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)