Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20392
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.7  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   7.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.2  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   9.2  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    25   9.2  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.2  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +1

Query: 532 TEHSRCLQLSIKTLLWFKHRTLVPDFRRRLLTNCSNDKLYT--FVLLLGASSLSEVD*YV 705
           T HS+   L    L+ FK+  L P  R +L    +        + LL+    +S +   V
Sbjct: 530 TLHSQQRDLMEIVLVAFKYLHLSPSNRLQLWLKVAYCSALADLYELLMCNEKMSNLLRRV 589

Query: 706 LQIVSQINLINV*YIIRCMNFNLL 777
           L+I+S  + I+  ++ +C+N NLL
Sbjct: 590 LKIMSSNDNIDELFLKKCLNINLL 613


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 580 TIAVFLLTIAGIASVLFNPSEVSITRV*TPGLFGRAHP 467
           TIA F+LTIAG A  +++ S   ++R  + G++G   P
Sbjct: 98  TIAAFILTIAGRAGAVYHISFPVLSRS-SFGIWGSLWP 134


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 618  PPTKIWNQGAMFKP*QCFY*QLQA--SRVFCLIQVRYRLH 505
            PPT +  + A     Q  + ++Q   S   CL+ ++YR+H
Sbjct: 1409 PPTVLSKKAASLNYSQSLFVRIQKNFSNQMCLLSIQYRMH 1448


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 456 TRHRLQSILMSPFQEHASVHPSLPDKRHGRPLAPQRKSYYLLSDHRSLYD 307
           T H L   L +   +H+ +   LPDKR    L P   + +   D+  + D
Sbjct: 209 TIHELNEHLKNVNSKHSEIDDLLPDKRSIVSLPPSTLNLHKQPDYAHVVD 258


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = -2

Query: 469 PSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPSGSPAQIILSVIRSP*PLRHSSFVT 290
           P+     PTS +   S+S++ +G  E+P +         A  +     SP     S  V 
Sbjct: 364 PASSSQMPTSSFNMESLSQSLLGTVEAPAEVG-------AISLTESFNSP-VSNSSPNVP 415

Query: 289 IGTFTSCNALDTSHL 245
           I  FTS  A + SHL
Sbjct: 416 INNFTSTCAFENSHL 430


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
 Frame = +3

Query: 285 PIVTNEECRKGYGDRITDNMICAGEPEGGRDACQGDS---GGPMHVLEMETSKYSEVGVV 455
           P V   ECR  YGD  T   +C G         QG+     G +  L  E + YS +   
Sbjct: 53  PYVFFRECRAKYGDVFT--FVCMGRKMTAFLGVQGNDFLFNGKLADLNAEEA-YSHLTTP 109

Query: 456 SWGEGCAR--PNKPGV-YTRVIDTSLGLNRTLA-MPAIVNKNTAMV*TS 590
            +G+      PN   + + + I + LG ++  + +P I+N+  A + TS
Sbjct: 110 VFGKDVVYDIPNHVFMEHKKFIKSGLGFSQFRSYVPLILNEMDAFLSTS 158


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 489 VCLVARTLRPKTRHRLQSILMSPFQEHASVHPSLPDK 379
           VC++A TLRP+T +   +  + P   +     ++P++
Sbjct: 314 VCMIAATLRPETMYGQTNCYVGPNITYGIYESNVPNE 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,907
Number of Sequences: 5004
Number of extensions: 67940
Number of successful extensions: 198
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)