Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20392
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0711 - 35682293-35682952 33 0.34
02_01_0302 - 2021221-2023305 32 0.44
05_03_0472 - 14464320-14464428,14464468-14464500,14464889-144655... 31 0.78
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 31 0.78
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 31 1.0
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 31 1.4
02_04_0382 - 22501041-22501279,22501717-22501810 30 2.4
11_01_0071 + 565349-565814,566626-566692,567255-567288,567747-56... 29 5.5
09_04_0715 + 19697134-19697211,19697212-19697300,19697416-196974... 28 7.2
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 28 7.2
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 28 7.2
06_03_1260 + 28805490-28805706,28807167-28807387 28 9.6
04_03_0791 + 19685720-19685914,19686436-19686459,19686823-196872... 28 9.6
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 9.6
01_05_0214 - 19362812-19363477 28 9.6
>03_06_0711 - 35682293-35682952
Length = 219
Score = 32.7 bits (71), Expect = 0.34
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 496 TPGLFGRAHPSPQDTTPTSEYFDVSISRTCIGPPESP*QASRP-PSGSPAQIILSVIRSP 320
TP R HP+ P+ + S S + PP P + P PS SP + S P
Sbjct: 41 TPAADERLHPADAALAPSQPPSEASSSAAALSPPAPPETSPLPAPSHSP-PVPHSAAPEP 99
Query: 319 *PLRHSS 299
P+ HS+
Sbjct: 100 SPMEHSA 106
>02_01_0302 - 2021221-2023305
Length = 694
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 493 PGLFGRAHPSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPSGSPAQ 347
PG ++PSP ++ T Y T P P ++ PPS SP Q
Sbjct: 487 PGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQ 535
>05_03_0472 -
14464320-14464428,14464468-14464500,14464889-14465572,
14465657-14465754,14465855-14465983,14466657-14466659
Length = 351
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -1
Query: 515 IDYTGINAWFVWSRAPFAPRHDTDFRVF*CLHFKNMHRSTRVSLTSVTAALWLPSANHII 336
IDY+G++ W V + P F+ ++ + V T+ T+ L L NH++
Sbjct: 276 IDYSGLDYWMVIACGALIPSFGRVFKRSLRWYYTGLLAKLLVKWTNCTSELILVDKNHLV 335
Query: 335 C 333
C
Sbjct: 336 C 336
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 31.5 bits (68), Expect = 0.78
Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -2
Query: 532 FNPSEVSI-TRV*TPGLFGRAHPSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPSGS 356
+NP SI T TPG G P+P D TP S D S S G SP PPS S
Sbjct: 103 YNPPSPSIGTSPTTPGGGGGYTPTPSD-TPPSPSSDTSPSTPGGGCSSSPTPCDAPPSPS 161
Score = 28.7 bits (61), Expect = 5.5
Identities = 22/57 (38%), Positives = 26/57 (45%)
Frame = -2
Query: 526 PSEVSITRV*TPGLFGRAHPSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPSGS 356
PS S T TPG G P+P D TP S D S + G +P + PPS S
Sbjct: 158 PSPSSDTSPTTPGGGGGYSPTPSD-TPPSPSSDTSPTTPGGGGGYTPTPSDAPPSPS 213
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 469 PSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPSGSPAQII 341
P + TP+S+ DV + T PP S S PPS PA+ +
Sbjct: 61 PPARAATPSSQADDVPTTTTATSPPSS--APSSPPSSPPAESV 101
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 315 GYGDRITDNMICAGEPEGGRDACQGDSGGPMHVLEMETSKYSEVGVVSWGEGCA 476
GYG RIT ++ GGR + GG LE + E+G +W E CA
Sbjct: 87 GYG-RITGEILRRRWEAGGRGRRRWGRGGNFSELERMADEAWELGGKAWEEACA 139
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 469 PSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPS 362
P +D P+ EY+D S PP SP PPS
Sbjct: 42 PDHEDPPPSPEYYDPPPSPDYYDPPHSPDYYDPPPS 77
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 469 PSPQ--DTTPTSEYFDVSISRTCIGPPESP*QASRPPS 362
PSP+ D P+ +Y+D S PP SP PPS
Sbjct: 49 PSPEYYDPPPSPDYYDPPHSPDYYDPPPSPDYYDPPPS 86
>11_01_0071 +
565349-565814,566626-566692,567255-567288,567747-567860
Length = 226
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 481 GRAHPSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPSGSPAQIILSV 332
GR P P DTT + S S T + P S + P+ A+ ++++
Sbjct: 50 GRPRPLPSDTTAAASTCSASPSHTPVSKPSSASGETTAPNPISARFVVAI 99
>09_04_0715 +
19697134-19697211,19697212-19697300,19697416-19697485,
19697756-19697816,19698223-19698461,19698578-19698704,
19698908-19699181,19699479-19699611,19700023-19700109,
19700231-19700365
Length = 430
Score = 28.3 bits (60), Expect = 7.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -3
Query: 435 ILMSPFQEHASVHPSLPDKRHGRPLAPQ 352
+ +P++EH + P +P+++ G AP+
Sbjct: 79 VFHAPYREHENEFPDIPEEKEGNGFAPK 106
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 583 KHRTLVPDFRRRLLTNCSNDKLYTF 657
+ R V D+ RRL+TNC + +++TF
Sbjct: 45 RRRRAVYDYVRRLITNCLSCQVFTF 69
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 351 AGEPEGGRDACQGDSGGPMHVLEMETSKYSEVGVVSWGEGCARPN 485
AG P G GGP H + +Y G S+GE C P+
Sbjct: 88 AGGPNKWGRGPGGADGGPRHKVPDRPCRYFLAGDCSYGEKCRYPH 132
>06_03_1260 + 28805490-28805706,28807167-28807387
Length = 145
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 160 RRPCRHPWQCHCLLH-CELASMHC*GLPSQ 74
RRPCRHP LLH +A +H LP Q
Sbjct: 34 RRPCRHPQSATALLHLLAVALLHL--LPHQ 61
>04_03_0791 +
19685720-19685914,19686436-19686459,19686823-19687205,
19687282-19687379,19687622-19687800,19687912-19688136,
19688619-19688678,19688816-19688896,19688983-19689388,
19690035-19690285
Length = 633
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 160 RRPCRHPWQCHCLLHCELASMHC*GLPSQLVLKGRYHCRKFRDYTADDE 14
R+ CR H +L + + C + ++VLK H KF D DE
Sbjct: 64 RQMCRSTRYLHFVLEEGMLEVDCPCVTPEVVLKASGHVDKFTDLMVKDE 112
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +3
Query: 300 EECRKGYGDRITDNMICAGEPEGGRDACQGDSGGPMHVLEMETSKYS 440
++C+ +G +++ C RDAC + G ++ MET+K++
Sbjct: 765 DKCKSSHGVGSSESSDCQRRSRR-RDACSSSATGEINETSMETNKFT 810
>01_05_0214 - 19362812-19363477
Length = 221
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 406 IGPPESP*QASRPPSGSPAQIILSVIRSP*PLRHSSFVTIGTFTSCNALDTS 251
+ PP SP Q S PP+ PA L + SP H+ T T + +D +
Sbjct: 33 LSPPYSPAQPSPPPTSPPASPTL-LPTSPLSDDHADHTTDSLITFASTVDVA 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,694
Number of Sequences: 37544
Number of extensions: 481728
Number of successful extensions: 1506
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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