Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20392
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    74   1e-13
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    72   4e-13
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    50   1e-06
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    40   0.002
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    33   0.30 
Z78410-9|CAB01637.2|  304|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical ...    30   1.6  
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AC024877-9|AAF60900.2|  214|Caenorhabditis elegans Hypothetical ...    29   4.9  
U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine rece...    28   6.5  
AF101309-5|ABD94097.1|  543|Caenorhabditis elegans Hypothetical ...    28   6.5  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 42/100 (42%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
 Frame = +3

Query: 243 GRWLVSNALQEVKVPIVTNEECRK--GYGDRI-TDNMICAGEPEGGRDACQGDSGGPMHV 413
           G  L +  L+E+ VP+++   C     Y  RI   +M+CAG   G  D+CQGDSGGP+  
Sbjct: 188 GSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPL-- 245

Query: 414 LEMETSKYSEVGVVSWGEGCARPNKPGVYTRVIDTSLGLN 533
           +      +   GVVSWG GCARP  PGVY  V   S  +N
Sbjct: 246 MCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWIN 285


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
 Frame = +3

Query: 267 LQEVKVPIVTNEECRKGYG--DRITDNMICAGEPEGGRDACQGDSGGPMHVLEMETSKYS 440
           LQ   +PI+   +C         ++ +  CAG  EGG D+CQGDSGGP      E   + 
Sbjct: 168 LQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYLEGGIDSCQGDSGGPF-ACRREDGAFV 226

Query: 441 EVGVVSWGEGCARPNKPGVYTRV 509
             GV+SWG+GCA+  +PG+YT V
Sbjct: 227 LAGVISWGDGCAQKKQPGIYTMV 249


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
 Frame = +3

Query: 258 SNALQEVKVPIVTNEECRKGY------GDRITDNMICAGEPEGGRDACQGDSGGPMHVLE 419
           S  LQ   VPI+++++C K +        +IT   ICAG    G     GDSGGP+ ++ 
Sbjct: 180 SQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHG--TAPGDSGGPL-LIH 236

Query: 420 METSKYSEVGVVSWG----EGCARPNK-PGVYTRV 509
               +Y ++G+ S+G    +G     K PGVYTR+
Sbjct: 237 KSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRI 271


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +3

Query: 267 LQEVKVPIVTNEECRKGYGDRITDNMICAGEPEGGRDACQGDSGGPMHVLEMETSKYSEV 446
           +Q + +   T   C + +G  I  +  C  E E  ++ C GDSGG +   + ++++   +
Sbjct: 233 IQVLTLATETLATCEENWGTSIPFDSFCTAEEED-KNVCSGDSGGGLTFHQSDSAREFII 291

Query: 447 GVVSWGEGCAR 479
            +VS+G  C +
Sbjct: 292 AIVSYGSDCVQ 302


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
 Frame = +3

Query: 279 KVPIVTNEECRKGYGDRI---TDNMICAGEPE----GGRDACQGDSGGPMHVLEMETSKY 437
           ++P+  + +C++ + DR+    D+ ICA             C GDSGG +   +    + 
Sbjct: 194 EIPMRIDRDCKRPWSDRLPADADDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRA 253

Query: 438 SEVGVVSWGEGCARPNKPGVYTRV 509
             + + S+G      N    +TRV
Sbjct: 254 FLIAITSFGTRGCPSNMLARFTRV 277


>Z78410-9|CAB01637.2|  304|Caenorhabditis elegans Hypothetical
           protein C51E3.5 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/66 (37%), Positives = 33/66 (50%)
 Frame = +2

Query: 572 CYGLNIAPWFQIFVGGF*LIVQMTNCTPLFYFLVPRRYRRLTDMFYKLFLR*I*LMFNIL 751
           CY LN+ P   + +    L++Q+     L     P RYR L   F KLF   I L+F IL
Sbjct: 80  CYMLNVLPVIGLTLAAP-LLMQI-GLDRLLAVSFPIRYREL--QFQKLFYTSIHLIFPIL 135

Query: 752 YDV*IL 769
           Y + IL
Sbjct: 136 YTISIL 141


>AF016679-7|AAB66161.1|  333|Caenorhabditis elegans Hypothetical
           protein T28C12.6 protein.
          Length = 333

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 416 KNMHRSTRVSLTSVTAALWLPSANHIICYPITVAFTTFF 300
           KN+  S  + +TS+T   W PSA   +   I + F  F+
Sbjct: 35  KNLPESKSLKITSLTIVFWFPSAKGHLVNLINIQFFPFY 73


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 381 CQGDSGGPMH-VLEMETSKYSEVGVVS 458
           C  D G P+  VL++E +KY +VG+VS
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVS 223


>AC024877-9|AAF60900.2|  214|Caenorhabditis elegans Hypothetical
           protein Y95B8A.4 protein.
          Length = 214

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 348 KSYYLLSDHRSLYDILHLSQSVLSPPVMHWIRATFLCSSPACDNTRVIVIGE 193
           +SYY + +       L  + + + P + H+IR  F+C +PA   + +IV G+
Sbjct: 41  RSYYFMKNGDKYQ--LSYTGTTIKPDLNHFIRVYFIC-APANSQSALIVFGD 89


>U64835-4|AAG24197.2|  343|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 25 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 419 FKNMHRSTRVSLTSVTAALWLPSANHIICYPITVAFTTFFICHNRYF 279
           FKN  +S  +SLT  T  +      +II   + + F+T F+  N  F
Sbjct: 224 FKNKLKSLELSLTLATVVISAVFVIYIIIQAVLLIFSTSFLVENLSF 270


>AF101309-5|ABD94097.1|  543|Caenorhabditis elegans Hypothetical
           protein H24G06.1e protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 420 FQEHASVHPSLPDKRHGRPLAPQRKSYYLLSDHRSLYDILHLSQSVLSPP 271
           +++H + +P +PD  H  PLAP+  S  L +  R     L  + ++  PP
Sbjct: 16  YRDHGTSYP-MPDSTHPPPLAPRTTSRVLSTAPRRSNSNLFAATNLEVPP 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,070,522
Number of Sequences: 27780
Number of extensions: 403174
Number of successful extensions: 1153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)