Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20392
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    59   4e-11
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 59.3 bits (137), Expect = 4e-11
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +3

Query: 252 LVSNALQEVKVPIVTNEECRKGYGDRITDNMICAGEPEGGRDACQGDSGGPMHVLEMETS 431
           ++S+ LQ+  + ++T  EC K YG+ I  N +CA     G+DACQ DSGGP+      T 
Sbjct: 305 MLSHILQKTTLNMLTQVECYKYYGN-IMVNAMCAYAK--GKDACQMDSGGPVLWQNPRTK 361

Query: 432 KYSEVGVVSWGEGCAR-PN 485
           +   +G++SWG  C + PN
Sbjct: 362 RLVNIGIISWGAECGKYPN 380


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 580 TIAVFLL-TIAGIASVLFNPSEVSITRV*TPG 488
           TIA  L+  I G    L NP+  SIT +  PG
Sbjct: 69  TIAAVLVGLILGFLGRLANPTPQSITLISFPG 100


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 145 HPWQCHCLLHCELAS 101
           +PW C C    EL+S
Sbjct: 924 NPWSCRCKFLQELSS 938


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,834
Number of Sequences: 438
Number of extensions: 4832
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)