Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20392
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c...    32   0.37 
At5g52830.1 68418.m06558 WRKY family transcription factor              30   1.5  
At1g66830.1 68414.m07596 leucine-rich repeat transmembrane prote...    29   3.5  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   4.6  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   4.6  
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ...    28   6.0  

>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
           chloroplast (DRT111) nearly identical to SP|P42698
           DNA-damage-repair/toleration protein DRT111, chloroplast
           precursor {Arabidopsis thaliana}; contains Pfam profiles
           PF01585: G-patch domain, PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 387

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 490 GLFGRAHPSPQDTTPTSEYFDVSISRTCIGPPESP*QASRPPSGSPAQIILSVIRSP*PL 311
           GL+G   P   D  P+     V  S T + PP       +PP+ +P Q IL  +  P P+
Sbjct: 4   GLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPP----TLRKPPAFAPPQTILRPLNKPKPI 59


>At5g52830.1 68418.m06558 WRKY family transcription factor
          Length = 348

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 715 QFVEHISQPPITTRHQEVKQRCTICHL 635
           Q ++  SQPP+ +R ++ +Q+ TICH+
Sbjct: 132 QLLQQQSQPPLRSRKRKNQQKRTICHV 158


>At1g66830.1 68414.m07596 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069:
           Eukaryotic protein kinase domain, multiple PF00560:
           Leucine Rich Repeat
          Length = 685

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 411 VLEMETSKY---SEVGVVSWGEGCARPNKPGVYTRVIDTSLGLNRTL 542
           +LEM T K    SE+ +V W E  +  NKP  Y  V+D  L  +R L
Sbjct: 602 ILEMVTGKSPVSSEMDLVMWVESASERNKPAWY--VLDPVLARDRDL 646


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 457 DTTPTSEYFDVSISRTCIGPPESP*QASRPPSGSPAQIILSVI--RSP*PLRHSS 299
           DT P       S  R+   PP  P +   PP GSP +I  S +  RSP PLR  S
Sbjct: 256 DTPPRRRPASPSRGRSPSSPP--PRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRS 308


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 457 DTTPTSEYFDVSISRTCIGPPESP*QASRPPSGSPAQIILSVI--RSP*PLRHSS 299
           DT P       S  R+   PP  P +   PP GSP +I  S +  RSP PLR  S
Sbjct: 263 DTPPRRRPASPSRGRSPSSPP--PRRYRSPPRGSPRRIRGSPVRRRSPLPLRRRS 315


>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 358

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/69 (30%), Positives = 26/69 (37%)
 Frame = +3

Query: 321 GDRITDNMICAGEPEGGRDACQGDSGGPMHVLEMETSKYSEVGVVSWGEGCARPNKPGVY 500
           G    D+    G P GG D   G   GP+       S+Y+  G   +G G   P   G Y
Sbjct: 204 GRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYA--GGYGYGRGSVGPEFGGGY 261

Query: 501 TRVIDTSLG 527
                 SLG
Sbjct: 262 NNYGGGSLG 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,892,702
Number of Sequences: 28952
Number of extensions: 368784
Number of successful extensions: 1062
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)