Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20391
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 29 0.57
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.99
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 27 1.7
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 26 4.0
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 5.3
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 25 7.0
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.0
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 25 9.2
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.2
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 25 9.2
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 25 9.2
>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 128
Score = 28.7 bits (61), Expect = 0.57
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 361 LMVITKCFIF-SYFINVQCYMKAGKGFRFF 447
L+ I+ F+F +Y +++ CY+K GF FF
Sbjct: 33 LLYISIIFLFLNYVVDIVCYVKNYNGFSFF 62
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 0.99
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -2
Query: 468 PAKQTFREKSKAFACLHVTLHIYEI*KYKTFSYYHKNLL---IYFIKVLSTFFYILCCIF 298
P K+ + ++K+ + +H + I F YH+ +L ++ I L +F ++
Sbjct: 128 PKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFL 187
Query: 297 SFNITLLYSFLF-CIRLF 247
SF LL LF C LF
Sbjct: 188 SF--PLLSFILFPCFSLF 203
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 6 RGERQLDSSFFYEHLLKYSIRSKL 77
RGE LD + YE L+ YS RS L
Sbjct: 322 RGESDLDDEYIYESLVNYS-RSSL 344
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/55 (23%), Positives = 25/55 (45%)
Frame = +2
Query: 47 PIEIFNKKQVICSAMHI*NFIKYRVYTDHSMLTKNNCIFKANHFVICMLLHTDKK 211
P+E+ + V+ A+ I ++ + D+ ++ CI N V LL D +
Sbjct: 173 PLELNTDQNVVLEAVEILGYVTISILRDNYAWERSRCIQVLNDLVSKSLLWIDSQ 227
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = -2
Query: 354 LIYFIKVLSTF---FYILCCIFSFNITLLYSFLF 262
+ +F + S+F F+ L + SF LLYSF+F
Sbjct: 4 MFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIF 37
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -2
Query: 369 YHKNLLIYFIKVLSTFFYILCCI----FSFNITLLYSFLFCIRLF 247
Y K+L I +L FF IL C+ + FNI + +S + LF
Sbjct: 416 YRKDLQKLGISILFVFFIILVCLAVIFYVFNIRIHWSDFKELNLF 460
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 165 KPTILLFVCYCTQTKRNDKLNSN 233
KPTIL F CY + K K+N N
Sbjct: 356 KPTILTFTCYKSSLK---KMNQN 375
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +3
Query: 132 IQC*RKIIAFSKPTILLFVCYCTQTKRNDKLNSNINF 242
I C + + + T+L+F C + +K SNINF
Sbjct: 68 IDCYQDLDTGTLQTMLIFCCTLRMIEHYEKSLSNINF 104
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 387 YKTFSYYHKNLLI-YFIKVLSTFFYILCCI 301
Y Y +KN+L+ Y + ++ ++Y+L C+
Sbjct: 48 YDRICYDYKNILLKYELFIIYYYYYLLICL 77
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 351 IYFIKVLSTFFYILCCIFSFNI 286
I F LS Y++C +FS NI
Sbjct: 451 IVFFGYLSWIGYVICFVFSLNI 472
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 459 QTFREKSKAFACLHVTLHIYEI*KYKTFSYYHKNL 355
Q FR++ LH TL + + ++ FS + K L
Sbjct: 561 QDFRQRFAILKALHATLETWYVTVHRGFSVFEKVL 595
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,653
Number of Sequences: 5004
Number of extensions: 38607
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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