Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20391
         (529 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               29   3.1  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.1  
SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   9.6  

>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1055

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
 Frame = -2

Query: 348 YFIKVL--STFFYILC--CIFSFN-ITLLYS-FLFCIRLF---ARN*CLS*ACHSFLSVC 196
           +F  VL  +  F+ +C  C   FN ++L++S F+ C +L    ARN        + L  C
Sbjct: 682 FFTDVLLSNIVFFTICVLCFLLFNPVSLIFSNFMDCSQLADNNARNFFSYIVAVALLHFC 741

Query: 195 NNIQITKWLALKMQLFF 145
           N  Q+T W+   +   F
Sbjct: 742 NFTQLTSWMKTSLAAVF 758


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 369  YHKNLLIYFIKVLSTFFYILC-CIFSFNITLLYSFLFCIRLFARN*CLS*AC 217
            Y   + I+ + V   F Y+   CIF+ +++L Y +L  I +FA +  L   C
Sbjct: 1951 YLCGIRIFALSVSLRFLYLCAFCIFALSVSLRYLYLCAICIFALSVSLRYIC 2002


>SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 351 LKDSYGNN*MFYIFIFHKCAMLHEGR 428
           L++S   N  F +  FHKC++LH  R
Sbjct: 582 LENSKNENVSFCVVEFHKCSILHNER 607


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,942,519
Number of Sequences: 59808
Number of extensions: 254896
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)