Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20391
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    33   0.096
U80842-5|AAK71419.2|  305|Caenorhabditis elegans Serpentine rece...    31   0.51 
AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical ...    31   0.51 
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF024498-8|AAF39807.3|  305|Caenorhabditis elegans Serpentine re...    29   2.1  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   3.6  
AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm rece...    28   4.8  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    27   6.3  
U40955-4|AAA81752.1|  297|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      27   8.3  

>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 375 SYYHKNLLIYFIKVL--STFFYILCCI--FSFNITLLYSFLFCIRL 250
           +Y +    +Y I  +  S FF+++ C   F FN T+L  +++CI +
Sbjct: 24  NYLYLEFFLYIIDTIQFSFFFWVMLCAKQFHFNFTILLGYIYCIHI 69


>U80842-5|AAK71419.2|  305|Caenorhabditis elegans Serpentine
           receptor, class i protein50 protein.
          Length = 305

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -2

Query: 450 REKSKAFACLHVTLHIYEI*KYKTFSYYHKNLLIYFIKVLSTFFYILCCI 301
           RE S AF  L    +I E  K   F+ Y  +    F  +++TF  +L CI
Sbjct: 158 REVSMAFVVLTYPQYISEFSKLNNFAIYQWSFWFIFSGIVATFGIVLYCI 207


>AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical
           protein ZK105.8 protein.
          Length = 289

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -2

Query: 378 FSYYHKNLLIYFIKVLSTFFYILCCIFSFNITLL 277
           F +Y  N+ + + K+L   F I+C +   ++TLL
Sbjct: 11  FYFYTGNIRVDYFKILKEIFQIMCILLDIHLTLL 44


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 189 IQITKWLALKMQLFFVNIE*SVYTLYFIKF*ICIAEQ-ITCFLLNISIGVH 40
           +QI KWLALK +L   ++   V+   +I F + +  + +T F L     +H
Sbjct: 838 LQIFKWLALKFRLLAEDLRVYVFGCIYIYFELIVPSKCLTLFFLKKRSSLH 888


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 189 IQITKWLALKMQLFFVNIE*SVYTLYFIKF*ICIAEQ-ITCFLLNISIGVH 40
           +QI KWLALK +L   ++   V+   +I F + +  + +T F L     +H
Sbjct: 838 LQIFKWLALKFRLLAEDLRVYVFGCIYIYFELIVPSKCLTLFFLKKRSSLH 888


>Z70780-1|CAA94819.1|  336|Caenorhabditis elegans Hypothetical
           protein F46B6.2 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 426 CLHVTLHIYEI*KYKTFSYYHKNLLIYFIKVLSTFFYILCCIFSF 292
           C  +T +     K + +SY+++ ++  FI ++S F    CC F F
Sbjct: 163 CTLLTFYSATETKIRLYSYHYQVVISIFIIIVSFFHLRYCCTFFF 207


>AF024498-8|AAF39807.3|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein105 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 357 LLIYFIKVLSTFFYILCCIFSF-NITLLYSFLFCI 256
           +L YF K+  T FYILC   +  NI +L ++ F +
Sbjct: 29  MLYYFSKLQKTSFYILCASKTISNIFMLLTYFFYV 63


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 354  LIYFIKVLSTFFYILCCIFSFNITLLYSFLFCIRLF 247
            L+Y + +L + F+ L  IF+ + T+L SFL    LF
Sbjct: 933  LLYSVTILMSTFFFLPIIFTHSQTILTSFLHIPVLF 968


>AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 13 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 387 YKTFSYYHKNLLIYFIKVLSTFFYILCCIFSFNITL-LYSFL 265
           Y+ ++ +  N L YF    S F++  C  F F   L  Y FL
Sbjct: 118 YRYWAVFDTNKLAYFEGCNSLFWFFYCAFFGFQYALGTYFFL 159


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 357 LLIYFIKVLSTFFYILCCIFSFNITLLYSFLFCIRLFARN*CLS*ACHSFLSVC 196
           ++I FI  LS  F     +F FN+ LLYS L+  R+  +   L   C     +C
Sbjct: 3   IIIAFIIALSILFSQF--VFYFNLYLLYSILYSKRIGFKPELLIIYCRIAADIC 54


>U40955-4|AAA81752.1|  297|Caenorhabditis elegans Hypothetical
           protein F48B9.2 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 363 KNLLIYFIKVLSTFFYILCCIFSF 292
           + LLI F+ +LS  F++L C++ F
Sbjct: 255 EELLIAFLIMLSLTFFVLMCVYGF 278


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 432 FACLHVTLHIYEI*KYKTFSYYHKNLLIYFIKVLSTFFYILCCIFSFNI 286
           F C HV +  Y+  KY+ F         +F+ +L+   ++L  IF  N+
Sbjct: 123 FGCFHVYITSYKYHKYRAF------FRGWFVPILNCLNFVLALIFLINL 165


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 360 NLLIYFIKVLSTFFYILCCIFSFNITLLYSFLF 262
           +LL YF  V   +F++  C  +F IT  +  +F
Sbjct: 27  SLLFYFFTVDFPYFFLTKCSLNFRITKFFCVVF 59


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 375 SYYHKNLLIYFIKVLSTFFYILCCIFSFNITLLYSFL 265
           S Y+ + ++YF+ +L+     L    S  IT L SFL
Sbjct: 407 SGYYLSRILYFLNILTRSICYLLLFLSLGITALGSFL 443


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 375 SYYHKNLLIYFIKVLSTFFYILCCIFSFNITLLYSFL 265
           S Y+ + ++YF+ +L+     L    S  IT L SFL
Sbjct: 407 SGYYLSRILYFLNILTRSICYLLLFLSLGITALGSFL 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,934,731
Number of Sequences: 27780
Number of extensions: 215898
Number of successful extensions: 538
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)