Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20391
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.5  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   2.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   2.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   2.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   2.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.9  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 322 KCTKYFNKVY*KILMVITKCFIFSYF 399
           K  KYF K +     ++   FIF YF
Sbjct: 2   KIQKYFGKNFPSTSFILINYFIFLYF 27


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 288 Y*N*RYNTRCKKMY 329
           Y N  YN  CKK+Y
Sbjct: 100 YNNNNYNNNCKKLY 113


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 288 Y*N*RYNTRCKKMY 329
           Y N  YN  CKK+Y
Sbjct: 100 YNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 288 Y*N*RYNTRCKKMY 329
           Y N  YN  CKK+Y
Sbjct: 100 YNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 288 Y*N*RYNTRCKKMY 329
           Y N  YN  CKK+Y
Sbjct: 100 YNNNNYNNNCKKLY 113


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 294 N*RYNTRCKKMY 329
           N  YN  CKK+Y
Sbjct: 344 NNNYNNNCKKLY 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,408
Number of Sequences: 438
Number of extensions: 2636
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)