Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20389
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YVC1 Cluster: Putative uncharacterized protein; n=4; ...    36   1.1  
UniRef50_A7RPB2 Cluster: Predicted protein; n=1; Nematostella ve...    33   8.1  

>UniRef50_Q4YVC1 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 738

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 21/79 (26%), Positives = 44/79 (55%)
 Frame = -1

Query: 508 ELVYFYVTGSYQLLYIHASKSLESLWFRAILLIM*ILNYYKNDIILKVQLSTLN*YQIHS 329
           +L++ Y T S+++++IH + S     ++ I ++   L+Y++N  I+K   +T + Y I +
Sbjct: 47  KLLFLYTTNSFRIIHIHNNVSSLIFTYKYISIMFQKLSYFQNSEIIKCIYNTFD-YYIFN 105

Query: 328 NRASLELIYTQRAHKRYLF 272
           N A  E+   +   K  L+
Sbjct: 106 N-AKNEISVVEDKWKNILY 123


>UniRef50_A7RPB2 Cluster: Predicted protein; n=1; Nematostella
            vectensis|Rep: Predicted protein - Nematostella vectensis
          Length = 2285

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 157  SSTSLFFFNSKKKISFWFRVSSGVLKTLRCNLHQKIQIKIDNV--YVLVEYK*VQETLDL 330
            S +  +F+  +K+ S+WF +  GV     C     +  K+D+    V++ Y   QE L  
Sbjct: 1996 SRSGNWFYEDRKRNSYWFNICRGVSNVAMCPPSAAVCGKLDSSSRIVVLGYTQTQEFLSQ 2055

Query: 331  NEFGINLKLTVEPLK*C 381
             +  I L+ T + +  C
Sbjct: 2056 GDNKIMLRYTGDKIDGC 2072


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 652,921,994
Number of Sequences: 1657284
Number of extensions: 11701910
Number of successful extensions: 22288
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22283
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)