Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20389
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)                  33   0.26 
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_35933| Best HMM Match : CIMR (HMM E-Value=6.3e-14)
          Length = 644

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 157 SSTSLFFFNSKKKISFWFRVSSGVLKTLRCNLHQKIQIKIDNV--YVLVEYK*VQETLDL 330
           S +  +F+  +K+ S+WF +  GV     C     +  K+D+    V++ Y   QE L  
Sbjct: 449 SRSGNWFYEDRKRNSYWFNICRGVSNVAMCPPSAAVCGKLDSSSRIVVLGYTQTQEFLSQ 508

Query: 331 NEFGINLKLTVEPLK*C 381
            +  I L+ T + +  C
Sbjct: 509 GDNKIMLRYTGDKIDGC 525


>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 178 KKTGSCLKCVK-KKRNN*SNINYITNARLFSANYPV 74
           K+T  C++    K+RNN  N NY TN    + NY +
Sbjct: 45  KRTADCVQPANLKQRNNKRNSNYTTNNNHSNNNYTI 80


>SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 389 IIIQNLHNKQDRAEPKRFQTFARVYI*KLVRTSYIKVY*LILNIIFV 529
           ++  N+  KQ R +PKRF +F  V +        + V  L+LN+ F+
Sbjct: 190 LVFINVAIKQFREDPKRFVSFQYVILLNEAHNCLMAVVVLLLNLKFL 236


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,312
Number of Sequences: 59808
Number of extensions: 374425
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)