Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20389
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.2  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.8  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 439 IPNFCSRVYIEVGTNQLHKSI 501
           I N C RVY  + + + HKSI
Sbjct: 34  ICNICKRVYSSLNSLRNHKSI 54


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 496 SILTHIKYNICLLN*AAIRVILVS*GRNTTRSEFAVPRAAVDPETGL 636
           +IL  +K +I L+N   +  I+      +TR++       ++P TG+
Sbjct: 272 AILKGLKTSIILMNGTTLPQIMWGTKETSTRTDAYTVEIVLEPGTGI 318


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 587 EVSSPSRARPLTPRLVCKYIACNI 658
           +VSS  +  PL    VCK+  C +
Sbjct: 267 DVSSNDKVHPLYGHGVCKWPGCEV 290


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 403 ILNYYKNDIILKVQLSTLN 347
           I N YKN+I  K QLS  N
Sbjct: 33  IKNVYKNNIETKNQLSPFN 51


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 448 FCSRVYIEVGTNQLHKSILTH 510
           +C +VY+ +G  ++H  I TH
Sbjct: 21  YCEKVYVSLGALKMH--IRTH 39


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 617  TAARGTANSLRVVLRPHET 561
            T    T NSL + +RPH T
Sbjct: 1373 TLTATTTNSLTMKVRPHPT 1391


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 615 GRARDGELTSRCIAASRN*NNTYRCL 538
           G A + ++T+ C+A S +   T  CL
Sbjct: 730 GNAHETQITTLCVAISLSATVTLVCL 755


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 615 GRARDGELTSRCIAASRN*NNTYRCL 538
           G A + ++T+ C+A S +   T  CL
Sbjct: 820 GNAHETQITTLCVAISLSATVTLVCL 845


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,101
Number of Sequences: 438
Number of extensions: 3415
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)