Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20388
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704... 31 0.88
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.88
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316... 29 2.7
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 2.7
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 4.7
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 29 4.7
01_01_0100 - 755894-756662,757086-757598,758718-761050 29 4.7
09_04_0086 + 14445665-14446683,14448669-14448915 28 6.2
09_04_0085 + 14441123-14443507,14443731-14443787 28 6.2
08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128 28 6.2
08_02_0003 + 11180421-11180757,11180773-11185715 28 6.2
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 28 6.2
07_01_0376 + 2815419-2815755,2815912-2817659 28 6.2
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 28 6.2
02_02_0233 + 8105765-8107840 28 6.2
09_01_0095 - 1403586-1403987,1406687-1406722,1406995-1407012,140... 28 8.2
>08_02_1053 -
23968372-23968442,23969245-23969294,23970396-23970457,
23970527-23970709,23970737-23970901,23972235-23972408
Length = 234
Score = 31.1 bits (67), Expect = 0.88
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 371 EHHEDA-EKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINSSRPACNISKKIS 547
E H+D K V +ND + E+ + KW+A EQ++ S N+S KIS
Sbjct: 123 ESHDDLMAKTVKIYENDFKDGPFLFMHCWNELKNQ-PKWHAYLEQLDKSNKRKNVSHKIS 181
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 305 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 394
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>12_02_0772 -
23029703-23029715,23029835-23030463,23030637-23031673,
23031830-23032166
Length = 671
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D + E ID+ I ++D L +K+ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQKDTL 53
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 344 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 508
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/93 (25%), Positives = 45/93 (48%)
Frame = +3
Query: 81 VPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLRV 260
+ A+ K L++ + S EQEL +++ D+ L+AN + + +K +EE+K R
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQ-RD 728
Query: 261 I*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 359
KTL+ + G + ++ RS+ K
Sbjct: 729 NLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAK 761
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>09_04_0086 + 14445665-14446683,14448669-14448915
Length = 421
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 351 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 394
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_02_1424 + 26982502-26983572,26984129-26984908,26988299-26990128
Length = 1226
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 138 ELIDQANTIKDIDNSLRANK-KEVIDIPVKVIVEEIKPSLRVI 263
EL+ I DID + RA K +E +D+ VK+I + + LRVI
Sbjct: 149 ELLQSTAAIDDIDEARRAAKQQEKVDL-VKLITNDGQGGLRVI 190
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>07_01_0376 + 2815419-2815755,2815912-2817659
Length = 694
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 78 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 209
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = +2
Query: 239 NQTVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 418
++ ++ ++ E+ + ++ ++ L+D+RN E E+ +KI + V +
Sbjct: 553 SEAEIQKMVQEAELHSQKDQERKALIDIRNNADTTIYSVEKSLGEYR---DKIPAEVATE 609
Query: 419 INTAEIALRQGFQEVSDGIGKWYARTEQINSS 514
I TA LR SD I K A E N +
Sbjct: 610 IETAIADLRSVM--TSDDIEKIKANIEAANKA 639
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 371 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 502
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
>09_01_0095 -
1403586-1403987,1406687-1406722,1406995-1407012,
1407331-1407513
Length = 212
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 30 C*LYSCSPH-AQPAIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD 170
C Y C+P A A +++ A ++P+ +VDN + E+ + Q N + D
Sbjct: 66 CSAYRCNPQLAIGARDEEISMAPEEPV-LVDNNNQEENSLQQLNLLAD 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,921
Number of Sequences: 37544
Number of extensions: 311109
Number of successful extensions: 1227
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -