Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20388
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.39 
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     29   2.7  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)                    29   4.8  
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)                   28   6.3  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)                   28   8.4  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)                   28   8.4  
SB_1963| Best HMM Match : rve (HMM E-Value=0.022)                      28   8.4  

>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +2

Query: 329 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIG--KWYAR 493
           P PP H + E     H E  E+I S  K+   D+  A+  L++  +++ + +G  ++   
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVGYLRYMEA 341

Query: 494 TEQINSSRPACNISKKI 544
            + +N ++P    + KI
Sbjct: 342 KQLLNKTKPNYKEAYKI 358


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
 Frame = +2

Query: 254  ESDLENVEVP-----DENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 418
            E DLE V++      +E E +K   + +        QE+   N E+ + + K VSS+++ 
Sbjct: 968  EKDLEEVKLERRKHQEELETLKDKTLKVERELRDSQQENIKMNIENSKLSRK-VSSLESS 1026

Query: 419  INTAEIA---LRQGFQEVSDGIGKWYARTEQINSSRPACNISKKISALRYKS*MKRYILL 589
            +   E     LR    E +  + K Y   E       A  +  K    R     +  + L
Sbjct: 1027 VEIFEKDKKNLRTTVIEATSKLSKMYTELENEKRENEAFRVEVKDLMKRLTESREEILKL 1086

Query: 590  NQLTPSRPLLSTKRKIKL 643
            NQ    + +L+ +RK +L
Sbjct: 1087 NQQVVEQTVLADRRKTEL 1104


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/73 (21%), Positives = 30/73 (41%)
 Frame = +2

Query: 257 SDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEI 436
           +D    +V   ++ I+     LR+     H ++   +  HH   +KI S          +
Sbjct: 43  TDGSGSDVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKIDSKTSIATVAWMV 102

Query: 437 ALRQGFQEVSDGI 475
            +  GF  +SDG+
Sbjct: 103 IVSDGFHNLSDGL 115


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
 Frame = +2

Query: 251 VESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHH-----EDAEKIVSSVKN 415
           V SD E+ EV        RPL++  N    +H+ +   NP  +     ++  K V+ +K 
Sbjct: 695 VHSDTESEEVDVVTVSYDRPLLNRTNSSSSEHEVYVPNNPHKNNNRIKKNQTKTVNGLKE 754

Query: 416 DINTAEIALRQGFQEVSDG 472
            +N     +     E+S G
Sbjct: 755 HVNGKLSPIVSPKDEISTG 773


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = +2

Query: 272  VEVPDENEEIKRPLVDLRNPGPPQHQEHETQN---PEHHEDAEKI--VSSVKNDINTAEI 436
            +  PDE E +   + DL NP   +  E E Q+     + +D EKI  V S     N + I
Sbjct: 828  INSPDEREIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGI 887

Query: 437  ALRQ 448
             L Q
Sbjct: 888  ELAQ 891


>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 245 TVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDA 388
           T+ + +L + ++P E  E +   V+ + P P +  E E   P+  E A
Sbjct: 101 TLTDDELSDDDIPKEIMEAEEQQVENKFPEPEEEDEEEDDTPQGLEGA 148


>SB_1291| Best HMM Match : SWIRM (HMM E-Value=5e-23)
          Length = 158

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 245 TVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDA 388
           T+ + +L + ++P E  E +   V+ + P P +  E E   P+  E A
Sbjct: 12  TLTDDELSDDDIPKEIMEAEEQQVENKFPEPEEEDEEEDDTPQGLEGA 59


>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
          Length = 589

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +2

Query: 248 VVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINT 427
           V  S+ +    P +   ++R       P P  H+  ++ +     D+E+  SSV ND   
Sbjct: 427 VQRSNSQRSSSPTKEVTVQRSSSQRGPPSPSAHKSLQSSHQVQRSDSERAFSSVLNDPQA 486

Query: 428 AEI 436
            ++
Sbjct: 487 GDV 489


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/63 (22%), Positives = 27/63 (42%)
 Frame = +2

Query: 248  VVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINT 427
            V  S+ +    P +   ++R       P P  H+  ++ +     D+E+  SSV ND   
Sbjct: 3533 VQRSNSQRSSSPTKEVTVQRSSSQRGPPSPSAHKSLQSSHQVQRSDSERAFSSVLNDPQA 3592

Query: 428  AEI 436
             ++
Sbjct: 3593 GDV 3595


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
 Frame = +2

Query: 275 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIAL---- 442
           EVPD+   +   +  + +  PP+H+     N  HH    K  S+ +  I  AE  L    
Sbjct: 47  EVPDQ-VWLADDVSSVSSYSPPKHKHSSKSNGHHHNSRHKSESAKEPPILKAERKLLAST 105

Query: 443 ----RQGFQEVSDGIGKWYARTEQINSSRPACNISKKISALRY 559
                  +  VSD I +    T+     R +  IS++  A  Y
Sbjct: 106 SPTRSANYPYVSDRIPRKSTYTQDFADGRKSKAISRRDEAYGY 148


>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
          Length = 999

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +2

Query: 242 QTVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDI 421
           +T  E   EN EVP+ NEE      D R  G     E E    E +E   ++  + KN +
Sbjct: 263 ETHDEKPEENPEVPEVNEEDFIRAADARRRGEDGDTE-ELDGEEKYEHLHQVFVT-KNAV 320

Query: 422 NTAEIALRQGFQEVS 466
              E+  R+ F+E++
Sbjct: 321 LCTEV--RKNFKELT 333


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 245  TVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEK 394
            +++ES  E+    DE +E+ +   ++ +  P +  E  TQ+ +HH+   K
Sbjct: 1743 SLMESSFEDKSAEDELKEMTK---EIESMAPTEEHEDTTQHHDHHKHRGK 1789


>SB_44752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 263 LENVEVPDENEEIKRP---LVDLRNPGPPQHQEHETQNPEHHED 385
           L N  +PDE+ E  RP   L DL +  PP     E  +  +HED
Sbjct: 184 LVNTRMPDESPEPTRPPPPLDDLDDLPPPPPPPPEDDSIHNHED 227


>SB_29128| Best HMM Match : Ank (HMM E-Value=2.9e-19)
          Length = 454

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 108 LKVYLRPRGPCPGWQAARAASTNIVSNRAACSFL 7
           L +YLRPR P   W   R  S+++VS+  A S L
Sbjct: 404 LAIYLRPRDPNYKWSVVR--SSDVVSHVTADSIL 435


>SB_1963| Best HMM Match : rve (HMM E-Value=0.022)
          Length = 931

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 506 NSSRPACNISKKISALRYKS*MKRYILLNQLTPSRPLLSTKRKIKLLLKQSNRVSSL 676
           N S P   +  K +  R K+ + RYI +++     P  S+KRK++ L ++  R  +L
Sbjct: 19  NHSDPIEKMKLKSAVARRKAVLTRYINVSKTMLKTPHSSSKRKLRELAEKIERSLTL 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,682,575
Number of Sequences: 59808
Number of extensions: 350633
Number of successful extensions: 1194
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)