Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20388
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF100656-2|AAF99970.1|  196|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein ...    28   5.6  
Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.      27   9.8  

>U61948-4|AAB03146.1|  316|Caenorhabditis elegans Hypothetical
           protein C46A5.6 protein.
          Length = 316

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 441 FVK-ASRKCQTVLENGTLVPSKLTAPGQLATFPRKFRRSDTKV 566
           F+K A R+  TVLE  T  P+K T   QL+   RKF+R+DT+V
Sbjct: 66  FLKVAKRRSSTVLETAT--PAK-TPKIQLSERRRKFQRNDTEV 105


>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 287 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 448
           E    +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 373 EQARYQRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 287 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 448
           E    +RP V +  P PP  Q   + N  +H +   +V+  K+ ++  E ALR+
Sbjct: 373 EQARYQRPPVQMPPPPPPPQQNSPSVNENYHPE---LVNQFKSHLDEHEKALRR 423


>AF100656-2|AAF99970.1|  196|Caenorhabditis elegans Hypothetical
           protein F49F1.3 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = -3

Query: 241 ISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSGMAG 62
           +S   TL  +S ++  F   LL + + +LA ++       L   F G+    G++ G+AG
Sbjct: 25  LSRKATLYPLSYSTKNFLTLLL-VFVALLAVTVVEAGDPDLGGIFSGIGGMLGSIGGLAG 83

Query: 61  CACG--EHEYS*QQGRV*F 11
              G  +HE   ++GR+ F
Sbjct: 84  AGGGKKKHEARIEEGRIYF 102


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 60  QPAIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIK-DIDNSLRANKKEVID 212
           +P+ P KVP A  K   +     S+QEL  ++  +  D+ ++L +NKKE+ID
Sbjct: 489 KPSQPAKVPAAPIKAPRL-----SDQELESESQKLALDVISNLFSNKKEIID 535



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 287 ENEEIKRPLVDLRNPGPPQHQEHETQNPE 373
           EN+  +   V+ + P P QHQ+ + Q PE
Sbjct: 404 ENQRYEGNFVEYQPPPPQQHQQQQPQAPE 432


>Z83223-4|CAB05716.2|  534|Caenorhabditis elegans Hypothetical
           protein E01G4.4 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 332 GPPQHQEHETQNPEHHEDAEKIVSSVKN 415
           GPP HQ+H  Q  +H+  A    SS  N
Sbjct: 133 GPPVHQQHYQQQQQHYGAATSAPSSSYN 160


>U23147-7|AAC46691.1|  596|Caenorhabditis elegans Rapsyn protein 1
           protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 21  RPCC*LYSCSPHAQPAIPDKVPEAEDKPL 107
           +PCC   +  P +  A+P  +P AED PL
Sbjct: 557 KPCCSQAALPPSSIVALPPAMPLAEDGPL 585


>Z70306-3|CAA94325.1|  318|Caenorhabditis elegans Hypothetical
           protein C06G8.4 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 244 LISSTITLTGMSMTSFLFARRLLSMSLMVLAWSMSSCSL 128
           LI+ T+T  G  +T FL  +R++     +L  S   CSL
Sbjct: 45  LINITLTNVGACVTGFLLDQRIIQSGKSMLYVSYGYCSL 83


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 60   QPAIPDKVPEAEDKPLNVVDNLSS-EQELIDQANTIKDIDNSLRANKKE 203
            +  + +++   ED+ L + + L   E+EL+D+ N  K++D  +    +E
Sbjct: 1248 EKVLNNRILSLEDQNLELEERLQEMEEELLDEKNKKKEVDAKVEQKSEE 1296


>Z35639-8|CAI46560.1|  634|Caenorhabditis elegans Hypothetical
           protein D2045.1b protein.
          Length = 634

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 329 PGPPQHQEHETQNPEHH 379
           P PPQ Q  + Q+P HH
Sbjct: 469 PPPPQQQHQQQQHPPHH 485


>Z35639-7|CAA84697.3|  959|Caenorhabditis elegans Hypothetical
           protein D2045.1a protein.
          Length = 959

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 329 PGPPQHQEHETQNPEHH 379
           P PPQ Q  + Q+P HH
Sbjct: 794 PPPPQQQHQQQQHPPHH 810


>AY571963-1|AAS78587.1|  959|Caenorhabditis elegans ATX-2 protein.
          Length = 959

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 329 PGPPQHQEHETQNPEHH 379
           P PPQ Q  + Q+P HH
Sbjct: 794 PPPPQQQHQQQQHPPHH 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,969,722
Number of Sequences: 27780
Number of extensions: 278515
Number of successful extensions: 1302
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)