Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20388
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 33 0.14
At3g61390.2 68416.m06872 U-box domain-containing protein several... 31 0.56
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.56
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.73
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 31 0.73
At1g11670.1 68414.m01340 MATE efflux family protein similar to r... 30 1.3
At1g33060.2 68414.m04076 no apical meristem (NAM) family protein... 30 1.7
At1g33060.1 68414.m04075 no apical meristem (NAM) family protein... 30 1.7
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 2.2
At4g01735.1 68417.m00225 expressed protein ; expression supporte... 29 2.2
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik... 29 2.2
At5g54050.1 68418.m06722 DC1 domain-containing protein 29 3.0
At3g49690.1 68416.m05433 myb family transcription factor contain... 29 3.9
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 3.9
At2g23950.1 68415.m02860 leucine-rich repeat family protein / pr... 29 3.9
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 28 5.2
At3g14490.1 68416.m01835 terpene synthase/cyclase family protein... 28 6.8
At1g06230.2 68414.m00659 DNA-binding bromodomain-containing prot... 28 6.8
At1g06230.1 68414.m00658 DNA-binding bromodomain-containing prot... 28 6.8
At5g54030.1 68418.m06720 DC1 domain-containing protein contains ... 27 9.0
At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast, pu... 27 9.0
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 9.0
At3g15920.1 68416.m02013 phox (PX) domain-containing protein wea... 27 9.0
At2g28590.1 68415.m03474 protein kinase family protein contains ... 27 9.0
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 453 SRKCQTVLENGTLVPSKLTAPGQLATFP 536
SRK Q + NG P + TAPGQ + FP
Sbjct: 1022 SRKLQGYIRNGAFEPRRWTAPGQFSLFP 1049
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 31.5 bits (68), Expect = 0.56
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +2
Query: 278 VPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 454
+ +E EE+K L ++ G + +E T N H E + + + +DI GF
Sbjct: 319 IREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAADGF 376
Query: 455 QEVSDGIGKWYAR----TEQINSSRPACNISKKISALRYKS*MKRYILLNQLTPSRP 613
+ I +W+ R + IN P ++ + L +S ++ ++ L +L +RP
Sbjct: 377 TYEGEAISRWFERGHETSPMINKRLPHTSL---VPNLALRSAIQEWLQLRELL-NRP 429
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 359 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 496
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.73
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +2
Query: 320 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 475
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 31.1 bits (67), Expect = 0.73
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 251 VESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 424
V L+ V++ ++ EE + VDL +P P + +E E +N ++ ED +K K D N
Sbjct: 67 VTGALDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123
>At1g11670.1 68414.m01340 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family; EST gb|W43487
comes from this gene
Length = 503
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = -3
Query: 217 GMSMTSFLFARRLLSMSLMVLAWSMSSCSLDKLSTTFKGLSSASGTLSGMAGCACGEHEY 38
GMSM + +FA RL SM L + S ++ L G+ SA TL G A G H Y
Sbjct: 70 GMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLML-GMGSAVETLCGQAH---GAHRY 125
>At1g33060.2 68414.m04076 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 652
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 571 HSTFVSERRNF-LGNVASWPGAVNLLGTSVPF 479
H+ ++R++F L N+ WPG LL T PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375
>At1g33060.1 68414.m04075 no apical meristem (NAM) family protein
similar to NAC1 GB:AAF68626 GI:7716952 from (Medicago
truncatula)
Length = 648
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 571 HSTFVSERRNF-LGNVASWPGAVNLLGTSVPF 479
H+ ++R++F L N+ WPG LL T PF
Sbjct: 344 HNESSNDRKDFVLPNMMHWPGNTRLLSTEYPF 375
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 260 DLENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 358
DLE +VPDE EEIK P + G H HE
Sbjct: 261 DLE--DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At4g01735.1 68417.m00225 expressed protein ; expression supported
by MPSS
Length = 186
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 39 YSCSPHAQPAIPDKVPEAEDKPLNVVDNLSSEQELIDQAN 158
+ C P+ Q VP + NVV NL+S+Q+L +Q N
Sbjct: 91 HCCQPYHQNNDLSVVPMETQQQHNVVGNLASQQQLEEQNN 130
>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
transposon protein GB:AAB95292 GI:2088658 from
[Arabidopsis thaliana]
Length = 1148
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 248 VVESDLENVEVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEK 394
V +S++EN+ PD++EE I +V+L N +H+ HE+ + D ++
Sbjct: 448 VFQSEVENLAYPDKHEESIAFGMVNLSNES-SRHESHESSFSDQLGDMDQ 496
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 263 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 358
LE +VP+E EEIK P + G H HE
Sbjct: 272 LELEDVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At3g49690.1 68416.m05433 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 310
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +2
Query: 287 ENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVS 466
+ E++K L+ +N + QE E NP HH+D+ +++ + ++ +++ L +
Sbjct: 185 DQEDVKPVLI--KNMVKIEDQELEKTNPHHHQDS---MTNAFDHLSFSQLLLDPNHNHLG 239
Query: 467 DGIGKWYARTEQINSSRPACNIS 535
G G N++ P N S
Sbjct: 240 SGEGFSMNSILSANTNSPLLNTS 262
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 278 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 433
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At2g23950.1 68415.m02860 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 634
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -3
Query: 154 AWSMSSCSLDKLSTTFKGLS-SASGTLSGMAGCACGEHEYS*QQGRV 17
+W+M SCS D L S S SGTLSG G + S Q +
Sbjct: 64 SWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNI 110
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/96 (22%), Positives = 48/96 (50%)
Frame = +3
Query: 72 PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 251
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 252 LRVI*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 359
L+V + + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At3g14490.1 68416.m01835 terpene synthase/cyclase family protein
contains Pfam profile: PF01397 terpene synthase family
Length = 601
Score = 27.9 bits (59), Expect = 6.8
Identities = 25/74 (33%), Positives = 35/74 (47%)
Frame = +2
Query: 398 VSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINSSRPACNISKKISALRYKS*MKR 577
V +KNDINT E + +G EV+ G+ Y + + S A KI + YK M+
Sbjct: 492 VFRIKNDINTFEQEMSRG--EVAKGL-NCYMKQHGV-SKEEAIGEMNKIYSNYYKIIMEE 547
Query: 578 YILLNQLTPSRPLL 619
Y L RP+L
Sbjct: 548 Y--LTTTAVPRPIL 559
>At1g06230.2 68414.m00659 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +2
Query: 239 NQTVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 418
++ + E+ EN+ D ++ I +PLV+ + PQ + + E+ + ++D
Sbjct: 93 DKNLTEAPSENLPGDDSDKVIDKPLVEAFSQAQPQ-DDASLAAMDKSEEVPSQIPKAQDD 151
Query: 419 INTAEI 436
+NT +
Sbjct: 152 VNTVVV 157
>At1g06230.1 68414.m00658 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 766
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +2
Query: 239 NQTVVESDLENVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 418
++ + E+ EN+ D ++ I +PLV+ + PQ + + E+ + ++D
Sbjct: 93 DKNLTEAPSENLPGDDSDKVIDKPLVEAFSQAQPQ-DDASLAAMDKSEEVPSQIPKAQDD 151
Query: 419 INTAEI 436
+NT +
Sbjct: 152 VNTVVV 157
>At5g54030.1 68418.m06720 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 419
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 263 LENVEVPDENEEIKRPLVDLRNPGPPQHQEHE 358
LE +VP+E EEI+ P + + G H HE
Sbjct: 250 LELEDVPEEEEEIEDPFKVINDKGDIIHFSHE 281
>At4g09010.1 68417.m01488 L-ascorbate peroxidase, chloroplast,
putative identical to SP|P82281|TL29_ARATH (EC
1.11.1.11) {Arabidopsis thaliana}; ascorbate peroxidase
- Spinacia oleracea, (gi:1669585); contains Pfam domain
PF00141: Peroxidase; contains TIGRfam domain TIGR01409:
Tat (twin-arginine translocation) pathway signal
sequence; identical to ascorbate peroxidase APX4
(AT4g09010) mRNA, partial cds GI:31980499
Length = 349
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 450 ASRKCQTVLENGTLVPSKLTAPGQLATFPRKFRRSD 557
A RKC E G L+ + + GQ F R F RSD
Sbjct: 199 AIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSD 234
>At3g54670.1 68416.m06049 structural maintenance of chromosomes (SMC)
family protein similar to SMC1 protein [Bos taurus]
GI:4235253, 14S cohesin SMC1 subunit (SMC protein)
[Xenopus laevis] GI:3328231; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 9.0
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +3
Query: 66 AIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDID------NSLRANKKEVIDIPVKV 227
+I DK+P+ E + N+++ + + + +A ++D N L E++D K
Sbjct: 746 SIKDKLPQLEQEERNIIEEIDRIKPELSKAIARTEVDKRKTEMNKLEKRMNEIVDRIYKD 805
Query: 228 IVEEI-KPSLRVI*KT-LKCRMKMRKSR 305
+ + P++RV +T LK K + R
Sbjct: 806 FSQSVGVPNIRVYEETQLKTAEKEAEER 833
>At3g15920.1 68416.m02013 phox (PX) domain-containing protein weak
similarity to myosin heavy chain [Rana catesbeiana]
GI:4249699; contains Pfam profile PF00787: PX domain
Length = 755
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = +2
Query: 269 NVEVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 448
N + EN+ + + + D+R H+EHE + + + +V VK+ + T + LRQ
Sbjct: 526 NESLVQENQMLLQQINDIRENFENFHKEHEELEVKAKAELKVLVKEVKS-LRTTQSDLRQ 584
>At2g28590.1 68415.m03474 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 424
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 339 RSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTVLENGTLVPSKLTAPG 518
R+ KS K TTK F P K+T+ + + S C V G + +T
Sbjct: 6 RTPKSNKRSDTKTTK--NNDFTPKKLTVNANRDKLTQPSSDCLKVSICGDVSKEIVTKKD 63
Query: 519 QLA 527
QLA
Sbjct: 64 QLA 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,176
Number of Sequences: 28952
Number of extensions: 252800
Number of successful extensions: 1025
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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