Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20382
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 184 1e-47
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 2e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 94 2e-20
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 85 7e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 56 7e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 56 7e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 45 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 5e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 41 2e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.056
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.074
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.52
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.69
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 2.1
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 3.7
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.4
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 25 8.5
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 8.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.5
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 184 bits (448), Expect = 1e-47
Identities = 83/95 (87%), Positives = 86/95 (90%)
Frame = +1
Query: 232 GKAPPSGRMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 411
G+ G MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 412 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFTRP 516
VAPEEHP LLTEAPLNPK+NREKMTQI+FETF P
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAP 130
Score = 146 bits (353), Expect = 4e-36
Identities = 68/76 (89%), Positives = 73/76 (96%)
Frame = +3
Query: 507 HTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 686
+ PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTD
Sbjct: 128 NAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTD 187
Query: 687 YLMKILTERGYSFTTT 734
YLMKIL ERGY+F+TT
Sbjct: 188 YLMKILMERGYTFSTT 203
Score = 86.6 bits (205), Expect = 3e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +2
Query: 131 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.1 bits (231), Expect = 2e-21
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = +3
Query: 519 MYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMK 698
+YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+
Sbjct: 132 VYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLIS 191
Query: 699 ILTERGYSFTTT 734
+L +GY+F T
Sbjct: 192 LLLRKGYAFNRT 203
Score = 93.9 bits (223), Expect = 2e-20
Identities = 37/78 (47%), Positives = 59/78 (75%)
Frame = +1
Query: 274 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 453
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 454 LNPKANREKMTQIMFETF 507
+NP ANREKM + MFE +
Sbjct: 110 MNPVANREKMCETMFERY 127
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 137 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 241
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 93.9 bits (223), Expect = 2e-20
Identities = 42/91 (46%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +1
Query: 271 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTE 447
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 448 APLNPKANREKMTQIMFETFTRPPCTSPSKP 540
PL N+EK+ + +ET P + +P
Sbjct: 113 PPLANIRNKEKIAEYFYETLNVPALSFSLQP 143
Score = 88.2 bits (209), Expect = 1e-18
Identities = 37/77 (48%), Positives = 59/77 (76%)
Frame = +3
Query: 504 IHTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 683
++ PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 684 DYLMKILTERGYSFTTT 734
DYL L + G+ ++
Sbjct: 192 DYLQLQLRKSGHELVSS 208
Score = 52.4 bits (120), Expect = 6e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +2
Query: 149 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 250
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 85.4 bits (202), Expect = 7e-18
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 453
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 454 LNPKANREKMTQIMFETF 507
LNP NRE +IMFE+F
Sbjct: 133 LNPPENRENTAEIMFESF 150
Score = 64.5 bits (150), Expect = 1e-11
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 8/73 (10%)
Frame = +3
Query: 519 MYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 674
+Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + +I + LAGR
Sbjct: 155 LYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGR 214
Query: 675 DLTDYLMKILTER 713
D+T ++ +L +R
Sbjct: 215 DVTYFVQSLLRDR 227
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 149 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 232
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 55.6 bits (128), Expect = 7e-09
Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 265 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 441
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 442 TEAPLNPKANREKMTQIMFETFTRP 516
TE NP R MT+++FE + P
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAP 145
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 507 HTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 680
+ P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 143 NAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQS 202
Query: 681 TDYLMKILTERGYSF 725
+ YL+K+ + SF
Sbjct: 203 SSYLLKLFQIKYPSF 217
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 149 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 244
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 55.6 bits (128), Expect = 7e-09
Identities = 28/73 (38%), Positives = 40/73 (54%)
Frame = +1
Query: 319 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 498
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 499 ETFTRPPCTSPSK 537
E+ R P T +K
Sbjct: 123 ESL-RCPATYLAK 134
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 134 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 235
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 40.3 bits (90), Expect = 3e-04
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3
Query: 501 NIHTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 680
++ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G +
Sbjct: 124 SLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAI 183
Query: 681 TDYLMKILTERGY 719
D L + L ++ +
Sbjct: 184 NDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +1
Query: 274 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 447
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 448 APLNPKANREKMTQIMFETFTRP 516
NP++ R+++ + FE P
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVP 131
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/89 (23%), Positives = 41/89 (46%)
Frame = +3
Query: 459 PQGQQREDDPDHVRNIHTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 638
PQ +++ +H PA Y+ QAV +A+ ++T +++D G + P+ +G +
Sbjct: 113 PQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLII 172
Query: 639 PHAILRLDLAGRDLTDYLMKILTERGYSF 725
I + LAG L + ++ F
Sbjct: 173 RKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 134 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 235
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 513 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 692
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +T +L
Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHL 235
Query: 693 MKILTE 710
+L E
Sbjct: 236 QNLLRE 241
Score = 32.3 bits (70), Expect = 0.074
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +1
Query: 334 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 501
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 502 TFTRPPCTSPSKP 540
P T +P
Sbjct: 172 ECQVPGFTIAYEP 184
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/49 (32%), Positives = 32/49 (65%)
Frame = +3
Query: 576 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYS 722
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 32.7 bits (71), Expect = 0.056
Identities = 14/75 (18%), Positives = 38/75 (50%)
Frame = +3
Query: 501 NIHTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 680
++H + +++ + + +G + V+D G + + EG +P++ ++++ G D+
Sbjct: 269 DLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDI 328
Query: 681 TDYLMKILTERGYSF 725
T MK+L + +
Sbjct: 329 TLLFMKLLMRSHFPY 343
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.074
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 517 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 651
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +1
Query: 514 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 651
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 514 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 651
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 514 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 651
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 538 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 642
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.69
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 502 TFTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 651
T T P T S S P VPP S T + PT ST SP P+
Sbjct: 174 TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +1
Query: 502 TFTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 651
T T P T S S P VPP S T + PT ST +P P+
Sbjct: 117 TSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +1
Query: 523 TSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 651
T S S P VPP S T + PT ST SP P+
Sbjct: 237 TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = +1
Query: 397 YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFTRPPCTSPSKPCSRCTRPVVPPV 576
Y+EL +A +E P L P PK K+ ++ S KP S+ TRP +P
Sbjct: 23 YSELPIAYQEIP--LQSLPPYPKV-ASKLKGVVAGG-KENNIASFQKPSSKATRPYIPSY 78
Query: 577 SCWTPATVSPTPCP 618
+ T +V P P P
Sbjct: 79 TRLT-YSVPPLPIP 91
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 538 PCSRCTRPVVPPVSCWTPATVSPTPCPST 624
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 514 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 621
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 394 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFTRP 516
+Y L E+HP+LLT+ A L P+ + ++ +I ++ P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 554 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 706
R RS HR+ G RR P+R HL R RH + R R H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 176 TYRSHCLLPTRQLLRRTS*ISEI 108
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 439 LTEAPLNPKANREKMTQIMFETFTRPPCTSPS 534
L L PK+N +M+ ++ T R P T+PS
Sbjct: 141 LDNGSLCPKSNHIRMSTLISFTCNRDPYTAPS 172
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +3
Query: 210 APCSPRSWEGPAI--RADGRY 266
A C W+GPA+ ADGRY
Sbjct: 393 AACQMEPWDGPALFTFADGRY 413
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +1
Query: 532 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 672
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 221 PSIVGRPRHQGGWSVWDRRTL 283
P+++ G WSVWD R+L
Sbjct: 350 PNLLATGADNGVWSVWDLRSL 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,161
Number of Sequences: 5004
Number of extensions: 76011
Number of successful extensions: 270
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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