Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20380
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 30 0.26
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 29 0.61
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 29 0.61
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.3
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.3
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 26 4.3
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 26 5.7
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 26 5.7
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 5.7
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 26 5.7
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 26 5.7
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 7.5
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 7.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.9
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.9
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.9
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 30.3 bits (65), Expect = 0.26
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 500 STQQELVHEDIYSEAHGKLKTIIRDLKKRQIWVFTEKKIFRYKIVR-EERNLW 655
ST+ L +DI ++ H + +++ K +W+ KI Y + EE LW
Sbjct: 342 STKTVLEFDDIVTQTHRAISQVVKQAKDNSVWI----KILTYSAIDVEEFQLW 390
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 29.1 bits (62), Expect = 0.61
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Frame = +1
Query: 133 IYQFIGHAIFSENKPSL-----KSVFY-PYLTIPETG--FQEIPSTLKYLSYNITL 276
I QFIGH +F + KP+L +S+F P ETG PS + + NI L
Sbjct: 115 ILQFIGHGVFEKRKPALLDNLIQSLFIAPLFAFLETGPFVGYYPSVVSKIRANIKL 170
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 315 EQGIFYGQLDPTSQQNSNSVVTQGSLVTYPSGPDGKEIPPLS 440
E G+ G L SQQN+N+ TQ S+ + P E PPLS
Sbjct: 534 EGGLLSGALRAPSQQNNNNSNTQHSINLHTIVPSPYE-PPLS 574
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 181 LKSVFYPYLTIPETGFQEIPSTLKYLSYN--ITLIRMKCLKRLPGLPNRVSSMVSW 342
+ S F+P L I + GF I + L++ ++L +C ++ G+ + + SW
Sbjct: 42 IPSNFFPQLFITDNGFAAIKKAVTKLNFQSLLSLDIFECCLQILGIATSYTILRSW 97
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 4.3
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +1
Query: 382 KARS*PTLRDRTAKKYPHYHLFSRNSTLC*CIQIELK*YLYSTRTCPRGYLLGSSWETQN 561
K++S P LR + + H H S++ + K + C R GSS +
Sbjct: 195 KSKSVPRLRGQFMEPVEHNHPLSKSLEEQSSFLEQSKDASSNLTACNRS---GSSLSSNF 251
Query: 562 NNTRLEEKTDLGVYGKKDISLQDR 633
++RL +KT L K SLQ +
Sbjct: 252 YSSRLSKKTSLASLNKSRASLQHK 275
>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 639
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 217 ETGFQEIPSTLKYLSYNITLIRMKCLKRL--PGLPNRVSSMVSWTRHLNRTQILLS 378
E ++I ST + +SY+ +KCL ++ P + SS V T + I++S
Sbjct: 196 EYAMKKINSTFQQMSYSKIFREIKCLAKMDHPNVIRYFSSWVESTTEATQMPIVMS 251
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 96 KKVLYICDNTNKNLPVHRACHFF*EQTISEVSLLSVFNHSRNRFSGNTFYVKISELQYYF 275
K ++Y+ D ++P++ + E+ SEV + N+S + G + E Y
Sbjct: 225 KYMMYVYDKWIFHIPLYFTVDYVSERLRSEVDFTTEANNSEHAREG------VEETDYLR 278
Query: 276 DKNEMPKTF 302
DK +PK +
Sbjct: 279 DKIYIPKVY 287
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = +1
Query: 169 NKPSLKSVFYPYLTIPETGFQEIPSTLKYLSYNITLIRMKC 291
NK + FY L +P F P Y S T I ++C
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLEC 160
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 405 SGPDGKEIPPLSFVLTEFHTLLMYSDRVKVVSLLNKNLSTRIFTRKLMG 551
SG K IPP +LTE +L++ + ++S++ L T +F K++G
Sbjct: 212 SGNSIKTIPPELGLLTELREVLLFDN---MISVIPAELGT-LFQLKILG 256
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +1
Query: 313 PNRVSSMVSWTRHLNRTQILLSPKARS*PTLRDRTAK--KYPHYHLFSRNS 459
P R S SW+ L R + SPK +S R K+PH + N+
Sbjct: 242 PKRSPSKGSWSSILRRPSLTYSPKRQSTGLHRRSLTNYFKFPHRNAHQHNA 292
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 225 TCFWNG*IRIKD*LQRWFVLRKNGMPDELVNSCWCCHKYTV 103
+C W + +KD VLRK + ++N+ C KYT+
Sbjct: 472 SCVWTTEVPLKDAFDLKSVLRKTDNVESVLNA--CVEKYTL 510
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 157 IFSENKPSLKSVFYPYLTIP 216
+F+E K + S ++PYL IP
Sbjct: 133 LFAEKKWMIMSFYFPYLAIP 152
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 7.5
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +1
Query: 175 PSLKSVFYPYLTIPETGFQEIPSTLKYLSYNITLIR----MKCLKRLPGLPNRVSSMVSW 342
P L FY PE+ F+ I STL +S + I ++C+K G+ S+ W
Sbjct: 179 PVLTVEFYGDAPPPESYFRTIKSTLLAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFW 238
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 610 FFRKHPNLSFLQVAYYCFEFPMSFRVNILVDKFLLSRDTTLT 485
FF K LSF ++ F F +F ++ D + S TT+T
Sbjct: 62 FFIKMRYLSFFFEFFFLFSFAFAFDFDVTSDDSINSALTTVT 103
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 574 VAYYCFE--FPMSFRVNILVDKFLLSRDTTLTRSEYISRVWNSV 449
V Y+ F FP+ +ILV+ L + TLT S + S+++ V
Sbjct: 570 VIYFIFNVPFPVFLCYDILVETILPAGSQTLTDSVFSSKLYKLV 613
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/28 (25%), Positives = 20/28 (71%)
Frame = +1
Query: 253 YLSYNITLIRMKCLKRLPGLPNRVSSMV 336
+ + ++ ++RM+ + ++P LP+R+ M+
Sbjct: 1208 HAAMDVYVLRMETITKIPNLPSRIKFML 1235
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 623 YKIVREERNLWQIYSD 670
Y+IV ++R++W+ YSD
Sbjct: 43 YEIVHQKRSVWRRYSD 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,649
Number of Sequences: 5004
Number of extensions: 69892
Number of successful extensions: 214
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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