Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20380
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 54 8e-08
12_01_0980 - 9924773-9925019,9925062-9925202,9925732-9926252 31 0.63
12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33... 31 1.1
06_03_0056 - 16046535-16047309,16047625-16048784,16049233-160493... 30 1.9
01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976 29 2.6
12_02_0219 + 15822050-15824896 29 3.4
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 4.5
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 28 5.9
05_03_0277 - 11509279-11510118,11514100-11514558 28 5.9
12_01_0588 + 4795620-4796093,4796124-4797476,4797575-4797827,479... 28 7.8
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 7.8
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 28 7.8
02_02_0342 + 9159661-9160299 28 7.8
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 54.4 bits (125), Expect = 8e-08
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Frame = +3
Query: 255 SELQYYFDKNEMPKTFAWLTEQGIFYGQLDPTSQQNSNS-----VVTQGSLVTYPSGPDG 419
SEL ++F K K F WL+ GI++G+L+ +Q +S S V +G G G
Sbjct: 214 SEL-HFFIKQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGESG 272
Query: 420 KEIPPLSFVLTEFHTLLMYSDRVKVVSLLNKNL 518
I P SF L+EFH LL+ D++KVV+ +++ +
Sbjct: 273 --IKPRSFALSEFHFLLLIRDKIKVVNRISQQI 303
>12_01_0980 - 9924773-9925019,9925062-9925202,9925732-9926252
Length = 302
Score = 31.5 bits (68), Expect = 0.63
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 151 HAIFSENKPSLKSVF-YPYLTIPETGFQEIPSTLKYLSYNITL-IRMKCLKRLPGLPNRV 324
H I +++ L+S F YL+I G E+P + L Y TL IR +K+LP R+
Sbjct: 41 HGIGTQHIKHLESFFRLAYLSISSDGITELPEQIGDLKYLQTLDIRHSGIKKLPPTIGRL 100
Query: 325 SSM 333
++
Sbjct: 101 QNL 103
>12_01_0042 +
337131-337612,338727-338898,338996-339204,339414-339572,
339914-340262
Length = 456
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +3
Query: 24 TDFRHWKGGRH-----THNWNKISQGCRNKKVLYICDNTNKNLPVHRACHFF*EQTISEV 188
T ++HW+ H N K + RNK+++++ D+ N+N V C E I +
Sbjct: 145 TKYQHWRWQPHGCNLPRFNATKFLEKLRNKRLVFVGDSVNRNQWVSMVCMV--EHFIPDG 202
Query: 189 SLLSVFNHS 215
+ V+N S
Sbjct: 203 RKMRVYNGS 211
>06_03_0056 -
16046535-16047309,16047625-16048784,16049233-16049340,
16049487-16049672,16050342-16050398
Length = 761
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 643 FFTNDLVAKYLFFRKHPNLSFLQVAYYCFEFPMSFRVNILVD-KFLLSRDTTLTRS 479
FF+N YL F FL Y E PM +V + D K +L+R+ + RS
Sbjct: 408 FFSNAYYQLYLSFSSFNKEMFLNFFYELSELPMELQVKAVRDFKSVLNREYQIWRS 463
>01_06_1260 - 35820781-35821161,35821163-35821420,35821524-35821976
Length = 363
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 64 LWVCLPPFQCRKSVASTVPR 5
LW+CL + CRK++A + PR
Sbjct: 231 LWLCLGAYACRKTLADSRPR 250
>12_02_0219 + 15822050-15824896
Length = 948
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 247 LKYLSYNITLIRMKCLKRLPG--LPNRVSSMVSWTRHL 354
L S+ I L+ + C KR LPN SS+++W R L
Sbjct: 860 LDVYSFGIVLLEIACGKRPASRQLPNGASSLLAWVRDL 897
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 277 IRMKCLKRLP--GLPNRVSSMVSWTRHLNRTQILLSPKARS 393
I + CL +P +PN ++ SW HLN + S +ARS
Sbjct: 655 INLPCLVLVPLSTMPNWMAEFASWAPHLNVVEYHGSARARS 695
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 1 RHEEQYW--RQIFDIGKGADTPITGIKFHRVAGTKKYCIFV 117
+H YW R + G G+ + I GI+F R K+Y +V
Sbjct: 355 KHNVTYWQNRSFYAFGLGSASYINGIRFSRPRRMKEYAEWV 395
>05_03_0277 - 11509279-11510118,11514100-11514558
Length = 432
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 271 TLIRMKCLKRLPGLPNRVSSMVSWTRHLNRTQILLSPKARS*PTLRDRTAKKYPHYHLFS 450
T + + + R+PGL + V S+ + RH N ++ R +R A+ Y F+
Sbjct: 27 TTLELSSIDRVPGLRHNVRSLHVFRRHKNSGPVVDGDSRRPAAVIRAALARALADYPAFA 86
>12_01_0588 +
4795620-4796093,4796124-4797476,4797575-4797827,
4797989-4798108,4798542-4798564,4798734-4798841
Length = 776
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +3
Query: 240 FYVK-ISELQYYFDKNEMPKTFAWLTEQGIFYGQLDPTSQQNSNSVVTQGSLVTYPSGPD 416
FY++ ++ L D + + L G YG LDP S N+V+ + P D
Sbjct: 367 FYIRALAVLPTGDDSMRLGRLLRALLVSGHCYGPLDPVSNIILNAVLYDAAYPPQPHEGD 426
Query: 417 GK-EIP 431
GK E+P
Sbjct: 427 GKAELP 432
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 91 RQPCEILFQLWVCLPPFQCRKSVASTVP 8
R+ C+++ + W CL P C+++ VP
Sbjct: 29 RRRCDLIRERWCCLCPVWCKEAQEVVVP 56
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/78 (17%), Positives = 34/78 (43%)
Frame = +3
Query: 210 HSRNRFSGNTFYVKISELQYYFDKNEMPKTFAWLTEQGIFYGQLDPTSQQNSNSVVTQGS 389
H+ +G T+ I ++F + + + + ++D + Q++ +++ Q +
Sbjct: 51 HNSIWVAGFTYLGTIPIYSHFFSRKRQANSKSGSLNSAMSRSKIDQQNPQSTTALLLQQT 110
Query: 390 LVTYPSGPDGKEIPPLSF 443
+ YP G +PP F
Sbjct: 111 MDLYPPGTSTSCMPPFYF 128
>02_02_0342 + 9159661-9160299
Length = 212
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 27 DFRHWKGGRHTHNWNKI-SQGCRNKKVLYI 113
D W GG H H ++KI S C N + Y+
Sbjct: 174 DLVEWVGGAHCHLFSKITSIKCENLSIFYL 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,873,776
Number of Sequences: 37544
Number of extensions: 401849
Number of successful extensions: 1020
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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