Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20380
(671 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_54208| Best HMM Match : fn3 (HMM E-Value=0) 30 2.0
SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0) 30 2.0
SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45) 30 2.0
SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4) 29 3.4
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 29 3.4
SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85) 29 3.4
SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0) 28 6.0
SB_51547| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003) 28 7.9
SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71) 28 7.9
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 28 7.9
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 324 IFYGQLDPTSQQNSNSVVTQGSLVTYPSGPDGKEIPPLSFVLTEFHTL 467
+F G +DP +N NSV+ L+T P+G + IPP ++ E L
Sbjct: 2247 VFDGDVDPEWVENLNSVLDDNKLLTLPNG-ERLAIPPNVRIMFEVQDL 2293
>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1292
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +1
Query: 94 TKKYCIFVTTPTRIYQFIGHAIFSENKPSLKSVFYPYLTIPETGFQEIPSTLKYLSYNIT 273
T+ + T PTR I H + + S+ Y T ++ F IP++ + + Y I+
Sbjct: 1194 TRTQSMIYTIPTRTQSMISHPMINTIATRTHSMIYTIPTRTQSIFHTIPTSTQSMIYTIS 1253
Query: 274 LIRMKCLKRLP 306
+ +P
Sbjct: 1254 TRTQSMIYTIP 1264
>SB_36210| Best HMM Match : Peptidase_M43 (HMM E-Value=0)
Length = 882
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +1
Query: 157 IFSENKPSLKSVFYPYLTIPETGFQEIPSTLKYLSYNITLIRMKCLKRLPGLPNRVSSMV 336
IF E+ + + +LTI ET + + ST+ +++ L+R C + P V S V
Sbjct: 267 IFVEDFSGIGNKILSWLTITETAPEIVESTIPSDKHDLALVRPPCGSTVCDNPEVVRSYV 326
Query: 337 SWTRHLNRTQIL 372
+ T HL + + L
Sbjct: 327 NNT-HLRQHKTL 337
>SB_34555| Best HMM Match : EGF (HMM E-Value=7.00649e-45)
Length = 979
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +3
Query: 219 NRFSGNTFYVKISELQYYFDKNEMPKTFAWLTEQGIFYGQLDPTSQQNSNSVVTQGSLVT 398
NRFS ++ Y + + + + K +A +E+G Y Q+D S +V TQG T
Sbjct: 843 NRFSASSHYSDLYDCDARYGRLNHAKYWAPRSEEGDHYLQIDMISVYIVCAVATQGG--T 900
Query: 399 YPSGPDGKEIPPLSFVL 449
+ S + + LSF L
Sbjct: 901 HSSYQEWTKRYKLSFAL 917
>SB_41150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 223 GFQEIPSTLKYLSYNITLIRMKCL 294
G Q IP K L YN+TL + C+
Sbjct: 46 GLQGIPQLFKKLDYNVTLFKYSCI 69
>SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)
Length = 742
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 186 LQRWFVLRKNGMPDELVNSCWCCHKYTVLFCSGNPV 79
+Q WF + +NG +++ WC Y V+F S P+
Sbjct: 629 IQLWFAM-ENGFSGQILFDKWCIGIYNVIFTSVPPL 663
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 103 YCIFVTTPTRIYQFIGHAIFSENKPSLKSVFYPYLTIPETGFQEI---PSTLKYLSYNIT 273
+CIFVT + + +I HA + + S +PY+T T I +T Y++Y T
Sbjct: 12 FCIFVTHASTTHPYITHASTTHPHIAHASTTHPYITHASTTHHYIVHASTTHPYITYAST 71
>SB_38852| Best HMM Match : Prion_octapep (HMM E-Value=0.85)
Length = 706
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 505 STRTCPRGYLLGSSWETQNNNTRLEEKTDLGVYGKKDISLQDRS*RTE-PM 654
S TC R Y +GS W Q R + T GV G +++Q + R E PM
Sbjct: 221 SRSTCRREYPMGSCWSYQGQ--RADVHTPWGVAGPIKVNVQTSTCRREYPM 269
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 505 STRTCPRGYLLGSSWETQNNNTRLEEKTDLGVYGKKDISLQ 627
S TC R Y +GS W Q T + T GV G +++Q
Sbjct: 423 SRSTCRRAYPMGSCWSYQGQRT--DVHTPWGVAGPIKVNVQ 461
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 505 STRTCPRGYLLGSSWETQNNNTRLEEKTDLGVYGKKDISLQ 627
S TC R Y +GS W Q R + T GV G +++Q
Sbjct: 473 SRSTCRRAYPMGSCWSYQGQ--RADVHTPWGVAGPIKVNVQ 511
>SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1736
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 333 GQLDPTSQQNSNSVVTQGSLVTYPSGPDGKEIPPLSFVLTEFHTLLMYS----DRVKVVS 500
G +DP ++ NSV+ L+T PSG + P ++F L E H L S R+ ++
Sbjct: 457 GDIDPEWIESLNSVLDDNRLLTMPSGERIQFGPNVNF-LFESHDLSCASPATISRMGMIF 515
Query: 501 LLNKNLSTRIFTRKLMGN 554
L +++ + + + N
Sbjct: 516 LSDEDTDVKALVKSWLAN 533
>SB_51547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 160 FSENKPSLKSVFYPYLTIPETGFQEIPS 243
F P + V+YPY+ IP TG Q + S
Sbjct: 164 FRNYAPLSQPVYYPYVYIPRTGEQSMNS 191
>SB_31125| Best HMM Match : zf-MYND (HMM E-Value=0.0003)
Length = 109
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 150 PDELVNSC-WC-CHKYTVLFCSGNPVKFYSSYGC 55
P+ LV C WC H + ++ CSG KFY + C
Sbjct: 57 PNGLVLDCSWCKAHGFGMMACSGCMSKFYCNEIC 90
>SB_24597| Best HMM Match : RNA_pol_delta (HMM E-Value=0.71)
Length = 1139
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 96 KKVLYICDNTNKNLPVHRACHFF*EQTISEVSLLSV 203
+KV + D TNK PV R HFF E IS L V
Sbjct: 770 EKVNELLDATNKLPPVFRRKHFF-ESDISNAELADV 804
>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1263
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 610 FFRKHPNLSFLQVAYYCFEFPMSFRVNILVDK 515
++RKHP ++ +Y EFP+S + LV K
Sbjct: 360 YYRKHPVIANFWTVFY--EFPLSMKKKFLVGK 389
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 27.9 bits (59), Expect = 7.9
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = +3
Query: 96 KKVLYICDNTNKNLPVHRACHF-F*EQTISE--VSLLSVFNHSRNRFSGNTFYVKISELQ 266
K LYICD +N+P A H + T+SE V L +F + FSG F EL
Sbjct: 434 KSTLYICDPAGENVP--NAFHLNLLKTTLSERFVKELDLF-YKAFYFSGKEF-----ELF 485
Query: 267 YYFDKNEMPKTF--AWLTEQGIFYGQLDPTSQQNSNSVVTQGSLVTYPS 407
Y N +PK+ + + + L P S S S + +PS
Sbjct: 486 YKVFFNSLPKSLNASEYNTRDLLTDLLQPKYFHTSISSSVLPSFICFPS 534
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,465,282
Number of Sequences: 59808
Number of extensions: 488710
Number of successful extensions: 1237
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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