Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20380
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical pr...    45   4e-05
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    32   0.43 
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    32   0.43 
Z81491-15|CAB04022.2|  216|Caenorhabditis elegans Hypothetical p...    30   1.3  
U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical p...    30   1.3  
U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical p...    30   1.3  
AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical ...    29   3.0  
U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine rece...    29   4.0  
U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z50070-11|CAD45593.1|  506|Caenorhabditis elegans Hypothetical p...    27   9.2  
Z50070-10|CAD45592.1|  508|Caenorhabditis elegans Hypothetical p...    27   9.2  
U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF039719-11|AAB96750.1|  191|Caenorhabditis elegans Hypothetical...    27   9.2  
AF003148-6|AAB54210.2|  306|Caenorhabditis elegans Cathepsin z p...    27   9.2  

>U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical
           protein W06B4.3 protein.
          Length = 962

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = +3

Query: 291 PKTFAWLTEQGIFYGQLDPTSQQNSNSVVTQGSLVTYPSGPDGKEIPPLSFVLTEFHTLL 470
           PK +AWL+  GI  G ++  +++  + +V + ++       +G+  PP    LT++H LL
Sbjct: 226 PKRYAWLSPDGISIGNVNIYAERIQDVLVEEFNIEHRLI--EGRLEPPTGIALTDYHVLL 283

Query: 471 MYSDRVKVVSLL 506
            YS RV  +SLL
Sbjct: 284 AYSSRVLALSLL 295



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 494 SISTQQELVHEDIYSEAHGKLKTIIRDLKKRQIWVFTEKKIFRYKIVREERNLWQIYSD 670
           S+    +++ ED ++   G     + D     +W++T+    +Y    E R +W+ Y D
Sbjct: 293 SLLPPHDVIFEDPWNPELGGALGFVSDNVAEFVWLYTQTFAMKYGTNDEARYIWKTYLD 351


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 324  IFYGQLDPTSQQNSNSVVTQGSLVTYPSGPDGKEIPP 434
            IF G +DP   +N NSV+    L+T P+G +   IPP
Sbjct: 2241 IFDGDVDPEWVENLNSVLDDNKLLTLPNG-ERLSIPP 2276


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 324  IFYGQLDPTSQQNSNSVVTQGSLVTYPSGPDGKEIPP 434
            IF G +DP   +N NSV+    L+T P+G +   IPP
Sbjct: 2241 IFDGDVDPEWVENLNSVLDDNKLLTLPNG-ERLSIPP 2276


>Z81491-15|CAB04022.2|  216|Caenorhabditis elegans Hypothetical
           protein D1086.7 protein.
          Length = 216

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = +3

Query: 345 PTSQQNSNSVVTQGSLVTYPSGPDGKEI-----PPLSFVLTEFHTLLMYSDRVKVVSLLN 509
           P S  N+N+ ++  S+    + P G  +     PP S V  E  T+L   D + +++L+N
Sbjct: 100 PASSINTNTGLSVNSITAITTEPLGSTVDFSATPPPSVVTEECKTILQQKDAILMINLIN 159


>U21317-12|AAN60539.1|  697|Caenorhabditis elegans Hypothetical
           protein B0495.10c protein.
          Length = 697

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +3

Query: 33  RHWKGGRHTHNWNKISQGCRNKKVLYICDNTNKNLPVHRACHFF*EQTISEVSLLSVFNH 212
           R+ K  R  H +N + +    K +L   D           C  +  +T  E     V   
Sbjct: 81  RNVKYYRDLH-YNTVIEKKLKKYILIFSDFATTETATQITCELYDNETECEDKWSKVGTS 139

Query: 213 SRNRFSGNTFYVKISELQYYFDKNEMPK 296
           S +RFS N  +      QY F+K ++ K
Sbjct: 140 SPHRFSRNIVFTDKFSYQYVFEKTQLIK 167


>U21317-10|AAA62529.1|  753|Caenorhabditis elegans Hypothetical
           protein B0495.10a protein.
          Length = 753

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +3

Query: 33  RHWKGGRHTHNWNKISQGCRNKKVLYICDNTNKNLPVHRACHFF*EQTISEVSLLSVFNH 212
           R+ K  R  H +N + +    K +L   D           C  +  +T  E     V   
Sbjct: 81  RNVKYYRDLH-YNTVIEKKLKKYILIFSDFATTETATQITCELYDNETECEDKWSKVGTS 139

Query: 213 SRNRFSGNTFYVKISELQYYFDKNEMPK 296
           S +RFS N  +      QY F+K ++ K
Sbjct: 140 SPHRFSRNIVFTDKFSYQYVFEKTQLIK 167


>AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical
           protein F48A11.5a protein.
          Length = 632

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = -2

Query: 646 PFFTNDLVAKYLFFRKHPNLSFLQVAYYCFEFPMSFRVNILVDKFLLSRD-TTLTRSEYI 470
           PF+T  L A       HPN    +   +      S   NI   + L S   +TL R +Y+
Sbjct: 327 PFYTEPLPAAVKEAFDHPNSEHRRPLLFYINHDRSIAANIFASQVLCSETVSTLIRHQYV 386

Query: 469 SRVWN 455
              W+
Sbjct: 387 LFPWD 391


>AF026210-4|AAT81192.1|  627|Caenorhabditis elegans Hypothetical
           protein F48A11.5b protein.
          Length = 627

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = -2

Query: 646 PFFTNDLVAKYLFFRKHPNLSFLQVAYYCFEFPMSFRVNILVDKFLLSRD-TTLTRSEYI 470
           PF+T  L A       HPN    +   +      S   NI   + L S   +TL R +Y+
Sbjct: 322 PFYTEPLPAAVKEAFDHPNSEHRRPLLFYINHDRSIAANIFASQVLCSETVSTLIRHQYV 381

Query: 469 SRVWN 455
              W+
Sbjct: 382 LFPWD 386


>U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein51 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 103 YCIFVTTPTRIYQFIGHAIFSENKPSLKSVFYPYLTIP 216
           YCIFV +P  + +F  H    +    L ++FY  LT P
Sbjct: 52  YCIFVHSPKYMKEFKWHLFHLQFWFLLLTIFYSILTTP 89


>U23173-1|AAC46708.1|  221|Caenorhabditis elegans Hypothetical
           protein K07E1.1 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 637 TNDLVAKYLFFRKHPNLSFLQVAYYCFEFPMSFRVNILVDKFLL 506
           T+D V   +FF   PNL+FL +  +  EF + F +N+    F L
Sbjct: 9   THD-VQSLVFFYNLPNLTFLPIETFFCEFSIFFFLNLFFPFFPL 51


>Z50070-11|CAD45593.1|  506|Caenorhabditis elegans Hypothetical
           protein F43G6.11b protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 72  KISQGCRNKKVLYICDNTNK 131
           K  + C++K++L+ C+NTN+
Sbjct: 81  KCEEYCKDKEILWTCENTNE 100


>Z50070-10|CAD45592.1|  508|Caenorhabditis elegans Hypothetical
           protein F43G6.11a protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 72  KISQGCRNKKVLYICDNTNK 131
           K  + C++K++L+ C+NTN+
Sbjct: 81  KCEEYCKDKEILWTCENTNE 100


>U00050-8|AAM22062.1|  363|Caenorhabditis elegans Hypothetical
           protein F09F7.4b protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 306 WLTEQGIFYGQLDPTSQQNSNSVVTQGSLVTY 401
           W  +Q    G++ PTS + ++  +T+GS ++Y
Sbjct: 267 WAKKQAATLGKMSPTSLKVTHRQITEGSKMSY 298


>U00050-7|AAA50696.1|  386|Caenorhabditis elegans Hypothetical
           protein F09F7.4a protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 306 WLTEQGIFYGQLDPTSQQNSNSVVTQGSLVTY 401
           W  +Q    G++ PTS + ++  +T+GS ++Y
Sbjct: 290 WAKKQAATLGKMSPTSLKVTHRQITEGSKMSY 321


>AL110490-1|CAB54439.1|  674|Caenorhabditis elegans Hypothetical
           protein Y48B6A.1 protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = +1

Query: 7   EEQYWRQIFDIGKGADTPITG---IKFHRVAGTKKYCIFVTTPTR----IYQFIGHAIFS 165
           +  YWR++FD   G D  +T     K H +A T KY      P      I+         
Sbjct: 104 DPDYWRKVFDKQTGTDVKLTDEQIEKIHNIA-TGKYPTIGYNPYEPFLDIFSSQKEIHPI 162

Query: 166 ENKPSLKSVFYP 201
           +N+P  KS F P
Sbjct: 163 DNRPEPKSRFIP 174


>AF039719-11|AAB96750.1|  191|Caenorhabditis elegans Hypothetical
           protein K04F10.1 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = -3

Query: 171 VLRKNGMPDELVN-SCWCCHKYTVL---FCSGNPVKFYSSYGCVCPLSNVENLSPVL 13
           ++ + G+  +L+   C   H + VL   +CS NP K   +YG  C +  V+++  VL
Sbjct: 67  IIFETGIEKQLIPLKCQVEHPFFVLGKGWCSCNPRKSGENYGLDCEILQVDDVCIVL 123


>AF003148-6|AAB54210.2|  306|Caenorhabditis elegans Cathepsin z
           protein 1 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 273 FDKNEMPKTFAWLTEQGIFYGQLD 344
           FD  ++PKT+ W    GI Y   D
Sbjct: 60  FDSEDLPKTWDWRDANGINYASAD 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,966,035
Number of Sequences: 27780
Number of extensions: 385238
Number of successful extensions: 1002
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)