Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20380
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein c...    39   0.003
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    30   1.6  
At5g38080.1 68418.m04588 hypothetical protein                          29   3.7  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    29   3.7  
At5g38680.1 68418.m04677 kelch repeat-containing F-box family pr...    28   4.9  
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    28   4.9  
At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR...    28   4.9  
At3g44690.1 68416.m04806 expressed protein                             28   4.9  
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g...    28   4.9  
At4g16040.1 68417.m02433 hypothetical protein                          27   8.6  

>At1g12470.1 68414.m01441 Pep3/Vps18/deep orange family protein
           contains Pfam profile PF05131: Pep3/Vps18/deep orange
           family; similar to Vacuolar protein sorting 18 (hVPS18)
           (SP:Q9P253) {Homo sapiens}
          Length = 994

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
 Frame = +3

Query: 309 LTEQGIFYGQLDPTSQQN----SNSVVTQGSLVTYPSGPDGKE-IPPLSFVLTEFHTLLM 473
           LT  GI++G L+  +Q +      + V   +L+ Y    DG E + P S  L+E+H LL+
Sbjct: 250 LTWTGIYHGGLNFGAQHSYPNGDENFVENKALLDYSKLSDGTEAVKPGSMALSEYHFLLL 309

Query: 474 YSDRVKVVSLLNKNL 518
             ++VKVV+ +++ +
Sbjct: 310 IGNKVKVVNRISEQI 324



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 85  VAGTKKYCIFVTTPTRIYQFIGHAIFSENKPSLKSVFYPYLTIPETGFQEIPSTLKYLSY 264
           ++   +Y +   TPTR+Y F G         S K     ++ +P     EIP+  + L Y
Sbjct: 178 ISSGMRYYVMAVTPTRLYSFTGIGTLESVFASYKERAVHFMELP----GEIPNR-QVLDY 232

Query: 265 NITLIRMK 288
              ++R+K
Sbjct: 233 LRLILRIK 240


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1163

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 202  YLTIPETGFQEIPSTLKYLSYNITLIRMKC--LKRLPGLPNRVSSM 333
            YL +    F+++PS+++ LS   TL   KC  LK + GLP  + S+
Sbjct: 1039 YLDLSSHEFEKLPSSIEVLSSLRTLCLNKCKKLKSIEGLPLCLKSL 1084


>At5g38080.1 68418.m04588 hypothetical protein 
          Length = 157

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 256 LSYNITLIRMKCLKRLPGLPNRVSSMVSWTRHLNRTQ 366
           L +   +I   C  +  GL N+V  +  W +H+NR Q
Sbjct: 105 LGFVAVMIAPSCPYQWKGLCNKVQELRDWWKHVNRPQ 141


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 TISEVSLLSVFNHSRNRFSGNTFYV 248
           T+   S+L+  N SRNRFSGN  +V
Sbjct: 192 TLFRCSVLNSLNLSRNRFSGNPSFV 216


>At5g38680.1 68418.m04677 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 357

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 336 QLDPTSQQNSNSVVTQGSLVTYPSGPDGKEIPPLSFVLTEFHTLLMYSDRVKVVSLLNK 512
           +  P  + NSN  +    +++  +       P LSFV   F +LL   +  K  SLLN+
Sbjct: 6   KFSPAPESNSNPSLPDALIISCIARVSRLYYPILSFVSKSFRSLLASPELYKERSLLNR 64


>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
            kinase, putative CLAVATA1 receptor kinase, Arabidopsis
            th., PATX:G2160756
          Length = 992

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 66   WNKISQGCRNKKVLYICDNTNKNLPVHRACHFF*EQTISEVSLLSVFNHSRNR 224
            W+KI   C  + V+ I D    N+P+  A   F       V++L V  HS  R
Sbjct: 927  WSKIQTNCNRQGVVKIIDQRLSNIPLAEAMELF------FVAMLCVQEHSVER 973


>At4g19520.1 68417.m02872 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1129

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 205 LTIPETGFQEIPSTLKYLSYNITLIRMKCLKRLPGLPNRVSSM 333
           L +  T  +E PSTL      + L+ ++  K+L GLP  +S +
Sbjct: 829 LYLAGTAVKEFPSTLLETLSEVVLLDLENCKKLQGLPTGMSKL 871


>At3g44690.1 68416.m04806 expressed protein 
          Length = 1176

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 521 HEDIYSEAHGKLKTIIRDLKKRQI 592
           H+D YS +HGK+  ++R+ K +++
Sbjct: 137 HDDEYSPSHGKINVLLRNDKTKRL 160


>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
           P-glycoprotein GI:4204793 from [Solanum tuberosum]
          Length = 1227

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 282 NEMPKTFAWLTEQGIFYGQLDPTSQQNSNSVVTQGSLVTYPSGPDGKE 425
           N+ P  FA    + I YG+ D TS++ +N+     ++    + P+G E
Sbjct: 443 NQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFE 490


>At4g16040.1 68417.m02433 hypothetical protein
          Length = 90

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 577 QVAYYCFEFPMSFRVNILVDKFLLSRDTTLTRS 479
           Q+ YY F  P+   +N  +   L+S+DTT   S
Sbjct: 54  QILYYLFVTPLMLLINPSIYILLISKDTTYISS 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,801,340
Number of Sequences: 28952
Number of extensions: 348054
Number of successful extensions: 1020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)