Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20379
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 161 1e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 159 4e-40
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 103 4e-23
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 76 7e-15
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 4.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 4.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 4.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 4.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 4.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 4.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 4.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 4.0
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 4.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 4.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 4.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 7.0
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 7.0
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.2
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 161 bits (391), Expect = 1e-40
Identities = 69/100 (69%), Positives = 83/100 (83%)
Frame = +3
Query: 216 FQHFLQRDRSWQAVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 395
F F + VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 396 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGLG 515
T+GKE+VD V D+IR++AD C+GLQGFL+FHSFGGGTG G
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSG 148
Score = 137 bits (331), Expect = 2e-33
Identities = 59/80 (73%), Positives = 73/80 (91%)
Frame = +2
Query: 509 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 688
SGF +LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDN
Sbjct: 147 SGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDN 206
Query: 689 EAIYDICRRNLDIERPTYTN 748
E+ YDICRRNLDIERP+Y N
Sbjct: 207 ESCYDICRRNLDIERPSYEN 226
Score = 99.1 bits (236), Expect = 6e-22
Identities = 43/63 (68%), Positives = 47/63 (74%)
Frame = +1
Query: 73 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 252
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 253 QYP 261
P
Sbjct: 61 YVP 63
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 159 bits (386), Expect = 4e-40
Identities = 66/100 (66%), Positives = 84/100 (84%)
Frame = +3
Query: 216 FQHFLQRDRSWQAVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 395
F F + VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 396 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGLG 515
T+GKE++D VL+RIR++AD C+GLQGFL+FHSFGGGTG G
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSG 152
Score = 141 bits (342), Expect = 9e-35
Identities = 61/80 (76%), Positives = 73/80 (91%)
Frame = +2
Query: 509 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 688
SG +LL+ERL+++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDN
Sbjct: 151 SGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDN 210
Query: 689 EAIYDICRRNLDIERPTYTN 748
EA YDICRRNLDIERPTY N
Sbjct: 211 EACYDICRRNLDIERPTYEN 230
Score = 92.3 bits (219), Expect = 7e-20
Identities = 47/68 (69%), Positives = 49/68 (72%), Gaps = 5/68 (7%)
Frame = +1
Query: 73 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 237
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 238 TGAGKQYP 261
TG GK P
Sbjct: 60 TGQGKFVP 67
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 103 bits (246), Expect = 4e-23
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +3
Query: 255 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 434
VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 60 VPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDV 119
Query: 435 IRKLADQCTGLQGFLIFHSFGGGTGLG 515
+R+ A+ C LQGF + HS GGGTG G
Sbjct: 120 VRREAEACDALQGFQLTHSLGGGTGSG 146
Score = 68.5 bits (160), Expect = 1e-12
Identities = 31/78 (39%), Positives = 48/78 (61%)
Frame = +2
Query: 509 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 688
SG +LL+ ++ +Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DN
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDN 204
Query: 689 EAIYDICRRNLDIERPTY 742
EA+ I L I+ P+Y
Sbjct: 205 EALSSIFANTLKIKSPSY 222
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/63 (33%), Positives = 28/63 (44%)
Frame = +1
Query: 73 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 252
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 253 QYP 261
P
Sbjct: 59 YVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 75.8 bits (178), Expect = 7e-15
Identities = 39/99 (39%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Frame = +3
Query: 225 FLQRDRSWQAVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 398
F Q D + + +PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 399 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGLG 515
+ I + ++D I + AD L+GF + HS GGTG G
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSG 148
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVD 685
SG S L+ERL+ Y KK ++++P Q VS VV+PYNS+L ++D ++D
Sbjct: 147 SGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLD 206
Query: 686 NEAIYDICRRNLDIERPTY 742
N A+ I L + PT+
Sbjct: 207 NAALAHIAADRLHTQNPTF 225
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = +1
Query: 76 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKQ 255
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 256 YP 261
P
Sbjct: 61 IP 62
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 308 ADLINNSRFKIDEDS--TGYCLPAPVSLKKVLKESSP 204
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP-QTRPSGVETILSTL---S 229
+K S + +++ P S SV P S S++S+ + T V + STL S
Sbjct: 456 VKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTLLSGS 515
Query: 230 SARPELASSTP 262
SA P +SSTP
Sbjct: 516 SAIPSTSSSTP 526
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 152 STASSLMARCPQTRPSGVETILSTLSSARPELASST 259
ST SSL + ++PS T ST SSA P SS+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Score = 25.4 bits (53), Expect = 9.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 80 SASLYTLAKPESRSVMPAGSFTAWSTASSL-MARCPQTRPSGVETILSTLSSARPELASS 256
S+S + + S S P+ S ++ T+SSL + P T S T S SS+ ASS
Sbjct: 206 SSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASS 265
Query: 257 T 259
+
Sbjct: 266 S 266
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 770 NLSMRRFSWCRLGAQCRDYGGRCH 699
N+ +RRF+W + Q ++Y CH
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNCH 958
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 171 WPDAHRQDHRGWRRFFQHFLQR 236
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 341 FWMKQLSVCASADLINNSRF--KIDEDSTGYCLPAPVSLKKVLKESSPPPMVLSVGIW 174
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 62 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 184
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,074
Number of Sequences: 5004
Number of extensions: 69864
Number of successful extensions: 240
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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