Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20377
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    62   5e-11
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    45   8e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    34   0.019
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    31   0.18 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   1.6  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   1.6  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.9  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   8.8  

>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = +3

Query: 255 FSNSKSRIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWD 434
           F+  K   IPNC+ ++K +  R F+G++L  C D + L +    +KG+LV+W T+  VWD
Sbjct: 21  FAGGKVVEIPNCLTRSK-DGNRLFLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWD 79

Query: 435 FIF-SKECCPVNFNDTPLIITEPLFNLP 515
            +  +      +  D  L++T+P+F +P
Sbjct: 80  LVMRNVGVMEPSMADYSLLLTQPVFTMP 107


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
 Frame = +3

Query: 276 IIPNCIMKAKSERRRP-------FIGSQLDECRDASGLFYIL-PFQKGFLVNWDTQKTVW 431
           + P C+ + K ER  P       F+GS+    R   GL  I  P ++G + NW   + +W
Sbjct: 34  LFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR---GLLKIQRPIERGIIQNWSDMEEIW 90

Query: 432 DFIFSKECCPVNFNDTPLIITEP 500
            +I+S +       + PL++TEP
Sbjct: 91  SYIYSDQQLNTLPEEHPLLLTEP 113


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 381 PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
           PF++  + NWD  + V D+ F K    ++  + P+ +TEPL N
Sbjct: 86  PFERNVISNWDLMEQVLDYTFLK--LGIDRMEHPICMTEPLAN 126


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
           DE +   G+  +  P + G + NWD  + +W   F  E   V   + P ++TE   N
Sbjct: 56  DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPCLLTEAPLN 111


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 180 LNKSYENERDLLLYIGQRSLYG*SWFSNSKSRIIPNCIMKAKSERRRPFIGSQLDEC 350
           +N++YE + +  +Y G       + FSN KS++IPNC     S    PF   +   C
Sbjct: 621 INQAYETQ-EAQVYKGMLKCSVCN-FSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTC 675


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 375 ILPFQKGFLVNWDTQKTVWDFIFS 446
           I P Q+G +V+W+  K  W  ++S
Sbjct: 111 IQPIQRGRVVDWEALKAFWKHLYS 134


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 297  KAKSERRRPFIGSQLDECRDASG 365
            +AKSERRRP      D C D+SG
Sbjct: 948  EAKSERRRPSRLIFYDNCGDSSG 970


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 505 LICLNTGGDDGNILRGIRMSVVVTDKCYRSGGIH 606
           ++ ++TGGDDG I R I +   +++       +H
Sbjct: 870 VLTISTGGDDGAISRSILLLEQISENSVVVNSLH 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,094
Number of Sequences: 5004
Number of extensions: 47364
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)