Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20377
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1170 - 9318332-9318461,9318551-9318613,9318694-9318744,931... 48 6e-06
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 44 1e-04
04_03_0738 + 19169764-19169897,19169987-19170116,19170614-191706... 33 0.18
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 32 0.32
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 32 0.32
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 32 0.42
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 32 0.42
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 32 0.42
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 32 0.42
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 32 0.42
12_02_1282 + 27528159-27529148,27529549-27529614 31 0.55
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 31 0.55
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 31 0.73
08_02_0441 - 17196352-17196536,17196780-17196906,17198018-171981... 29 3.0
02_04_0286 - 21590114-21590365,21590441-21590566,21591091-215911... 29 3.9
07_03_0143 - 14315097-14315130,14315594-14315662,14316152-143162... 28 5.2
07_03_0401 + 17724103-17724463,17724554-17724683,17725068-177250... 28 6.8
05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712... 28 6.8
01_06_1116 + 34629592-34630578,34631058-34631686,34632589-34632679 28 6.8
>01_01_1170 -
9318332-9318461,9318551-9318613,9318694-9318744,
9318837-9318921,9319005-9319068,9319139-9319340,
9319808-9320502
Length = 429
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 276 IIPNCIMKAKSERRRPFIGSQLD-ECRDASGLFYILPFQKGFLVNWDTQKTVWDFIFSKE 452
++PNC+ K ++ + QL + D +G+ P +G+L+N + Q+ VW+ + +
Sbjct: 30 VVPNCMAKPPGSKKW-LVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVI-RN 87
Query: 453 CCPVNFNDTPLIITEPLFNLP 515
V+ N++ L++ EP FN P
Sbjct: 88 LLQVDPNNSSLLLVEPQFNPP 108
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/87 (29%), Positives = 47/87 (54%)
Frame = +3
Query: 258 SNSKSRIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDF 437
S+SK+ P + KAK++R+ ++G +L+ RD + I P + G + +WD +W+
Sbjct: 99 SDSKNGAKPMDVDKAKTKRKL-YVGQELEFRRDHMEV--ISPMKDGTVTDWDIVDNIWNH 155
Query: 438 IFSKECCPVNFNDTPLIITEPLFNLPQ 518
F + +N + P++I EP N Q
Sbjct: 156 AFRQRLL-INPEEHPMLIAEPSTNTGQ 181
>04_03_0738 +
19169764-19169897,19169987-19170116,19170614-19170687,
19171208-19171288,19172054-19172087
Length = 150
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 375 ILPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFNLPQ 518
I P + G ++WD +W+ F + +N + P++I EP N Q
Sbjct: 90 ISPMKDGTFIDWDIVDNIWNHAFRQRLL-INPEEHPMLIVEPSTNTGQ 136
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPILLTEAPLN 113
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V D P+++TE N
Sbjct: 57 DEAQAKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEDHPVLLTEAPLN 112
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPILLTEAPLN 113
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPMN 112
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P ++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPALLTEAPLN 113
>08_02_0441 -
17196352-17196536,17196780-17196906,17198018-17198101,
17198282-17198348,17198575-17198633,17199211-17199336,
17199406-17199474,17199545-17199653,17199692-17199760,
17199876-17199979,17200518-17200567,17200696-17200774,
17200867-17200938,17201083-17201217,17201311-17201421,
17202088-17202129
Length = 495
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 381 PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
P G + +WD +WD F E V+ ++ +++T+P N
Sbjct: 71 PVTNGIVQSWDDMGHIWDHAFYSE-LKVDPSECKILLTDPPLN 112
>02_04_0286 -
21590114-21590365,21590441-21590566,21591091-21591198,
21591910-21591973,21592064-21592214,21592590-21592761,
21593164-21593394
Length = 367
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 410 GHSKNRLGLHIQQRMLPSQLQ*HPADHNRAPF*FASIQEAMTEIFFE-EYECQSLLRINA 586
GH+ N ++ ++ +L + L PAD NR + A++ AM F + + + Q+ R +
Sbjct: 81 GHNGNGAAIYTKENLLSNILTAIPADLNREDW-LAALPRAMVAAFVKTDKDFQTKARSSG 139
Query: 587 TDLAEYIIVG 616
T + II G
Sbjct: 140 TTVTFVIIDG 149
>07_03_0143 -
14315097-14315130,14315594-14315662,14316152-14316225,
14316316-14316331,14316716-14316845,14316936-14316999
Length = 128
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 375 ILPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFNLPQ 518
I P + G ++WD +W+ FS + P++I EP N Q
Sbjct: 72 ISPMKDGTFIDWDIVDNIWNHAFS-----FYAEEHPMLIVEPSTNTGQ 114
>07_03_0401 +
17724103-17724463,17724554-17724683,17725068-17725083,
17725130-17725203,17725693-17725761,17726224-17726257
Length = 227
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 375 ILPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFNLPQ 518
I P + G ++WD +W+ FS P + P++I EP N Q
Sbjct: 171 ISPMKDGTFIDWDIVDNIWNHAFS--FYP---EEHPMLIVEPSTNTGQ 213
>05_03_0482 -
14568108-14568284,14568912-14569970,14570532-14571236,
14571376-14571656,14571748-14571769
Length = 747
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +3
Query: 258 SNSKSRIIPNCIMKAKSERRRPFIGSQLDEC--RDASGLFYILPFQKGFLVNWDT 416
+NS+S N +MKA + R PF Q C D L Y +PF+ ++ W+T
Sbjct: 666 NNSESARKRNKVMKAVQDLRSPF---QRLACYPLDVGTLQYGIPFRVNYMCLWNT 717
>01_06_1116 + 34629592-34630578,34631058-34631686,34632589-34632679
Length = 568
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Frame = -2
Query: 301 AFIMQLGIILDLELENQL*PYRLRCPIYNKRSRSFS*LL---FKGYR*LLITLDVH-LLE 134
AFI + GI +DLEL L +C + + F + K + +++ L +H L+E
Sbjct: 257 AFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVE 316
Query: 133 FGLKYYCK----DVQNANVIYLG 77
LK + + V+ NV ++G
Sbjct: 317 VALKLFSRMLELKVRPNNVTFIG 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,927
Number of Sequences: 37544
Number of extensions: 281324
Number of successful extensions: 516
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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