Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20377
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 103 1e-22
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_56| Best HMM Match : Actin (HMM E-Value=0) 33 0.25
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 33 0.25
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 29 3.0
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 29 3.0
SB_41946| Best HMM Match : L71 (HMM E-Value=3.8) 27 9.2
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 103 bits (247), Expect = 1e-22
Identities = 43/65 (66%), Positives = 51/65 (78%)
Frame = +3
Query: 258 SNSKSRIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDF 437
SN R IPN I KAKSERR+ FIG Q++EC+D S LFY+LPFQKGFLVNWD +K +WD+
Sbjct: 251 SNQAPRSIPNAIFKAKSERRKLFIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDY 310
Query: 438 IFSKE 452
F KE
Sbjct: 311 TFGKE 315
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 354 DASGLFYIL----PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
+AS L Y+L P G + NWD K VWD+ F + ++ +T +++TEP N
Sbjct: 60 EASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLN 115
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 111
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 111
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 517
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 615 PTIMYSARSVAFIRNND*HSYSSKNISVIASCIE 514
P+++YS R+ +I N D S + IA C+E
Sbjct: 483 PSVLYSNRAQCYINNRDWQSAADDCTRAIAGCLE 516
>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 158
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 615 PTIMYSARSVAFIRNND*HSYSSKNISVIASCIE 514
P+++YS R+ +I N D S + IA C+E
Sbjct: 124 PSVLYSNRAQCYINNRDWQSAADDCTRAIAGCLE 157
>SB_41946| Best HMM Match : L71 (HMM E-Value=3.8)
Length = 216
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 129 PNSRRCTSNVISNHR 173
PNSRRC ++S+HR
Sbjct: 43 PNSRRCEEQILSHHR 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,008
Number of Sequences: 59808
Number of extensions: 332089
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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