Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20377
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 73 1e-13
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 73 1e-13
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 39 0.002
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 37 0.010
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.22
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 33 0.22
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 33 0.22
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 33 0.22
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 33 0.22
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 33 0.22
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 33 0.22
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 33 0.22
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 32 0.29
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 31 0.50
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 73.3 bits (172), Expect = 1e-13
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = +3
Query: 273 RIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDFIF 443
R++PN I+KAK E++R F+ + +EC D LFY+ P ++G++VNWDTQ+ +W+ F
Sbjct: 26 RLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF 82
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 73.3 bits (172), Expect = 1e-13
Identities = 26/57 (45%), Positives = 42/57 (73%)
Frame = +3
Query: 273 RIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDFIF 443
R++PN I+KAK E++R F+ + +EC D LFY+ P ++G++VNWDTQ+ +W+ F
Sbjct: 26 RLVPNSIVKAKHEKKRVFVAHEQEECSDKFSLFYVRPIERGYVVNWDTQQQIWEKTF 82
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 327 IGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLF 506
+G + + R + Y P G + NWD VWD F E ++ + L++TEP
Sbjct: 57 VGEECSQLRQMLDINY--PMDNGIVRNWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPL 114
Query: 507 N 509
N
Sbjct: 115 N 115
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 324 FIGSQLDECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEP 500
FIG + + R GLF I P + G + NW + +W++IF ++ + + P+++T+
Sbjct: 56 FIGPKAESNR---GLFSIEYPMEHGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDA 112
Query: 501 LFN 509
N
Sbjct: 113 PLN 115
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 13 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 68
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 43 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 98
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 112
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E + + P+++TE N
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRIAPEEHPVLLTEAPLN 111
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.50
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 66 YLKLPK*ITFAFCTSLQ*YFRPNSR---RCTSNV--ISNHR*PLNKSYENERDLLLYIGQ 230
Y + K I C ++ Y R N+R +C + + N+ + K+YE E LLY+
Sbjct: 966 YNFIEKGIRGGICNAMLRYSRANNRHLKKCNTEEESLKNYEEEILKNYEEESIYLLYLDA 1025
Query: 231 RSLYG*SWFSNSK 269
+LYG W + K
Sbjct: 1026 NNLYG--WAMSQK 1036
>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
protein F23D12.2 protein.
Length = 1322
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 437 HIQQRMLPSQLQ*HPADHNRAPF*FASIQEAMTEIFFEEYECQSL 571
++ RMLP+Q+Q A N+ FA+ + E E+ EC L
Sbjct: 437 NLLSRMLPTQVQSTTASLNKKTGTFAAYENQAQEYKSEQAECSKL 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,250,049
Number of Sequences: 27780
Number of extensions: 258580
Number of successful extensions: 504
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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