Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20377
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 40 0.001
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 40 0.001
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 38 0.004
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 38 0.005
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 33 0.15
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 33 0.20
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 32 0.35
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 32 0.35
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 32 0.35
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 32 0.35
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 31 0.46
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 31 0.46
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 31 0.61
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 31 0.61
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 31 0.61
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 30 1.1
At2g34380.1 68415.m04209 expressed protein 29 1.9
At5g47480.1 68418.m05863 expressed protein 29 2.5
At4g17480.1 68417.m02614 palmitoyl protein thioesterase family p... 27 7.5
At2g27490.2 68415.m03323 dephospho-CoA kinase family similar to ... 27 7.5
At2g27490.1 68415.m03322 dephospho-CoA kinase family similar to ... 27 7.5
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = +3
Query: 258 SNSKSRIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDF 437
+NS S K KS+R+ ++GSQ R + + P + G + +WD +W+
Sbjct: 55 TNSNSEDSKTESEKEKSKRKL-YVGSQAMSYR-RDHMEVLSPIKDGIVSDWDLVDNIWEH 112
Query: 438 IFSKECCPVNFNDTPLIITEPLFNLPQ 518
F K C ++ + P+++ EP N Q
Sbjct: 113 AF-KSCLMIDPTEHPMLLAEPPLNTQQ 138
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 276 IIPNCIMKAKSERR--RPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDFIFSK 449
+IPNC+ K S ++ P + L + D + P +G+L+N D Q+ +W +F+
Sbjct: 27 VIPNCLYKPLSSKKFIHPSPLTTLSDEIDLTSAAVRRPIDRGYLINSDLQREIWSHLFT- 85
Query: 450 ECCPVNFNDTPLIITEPLFNLP 515
+ + + L++TE ++P
Sbjct: 86 SLLHIAPSSSSLLLTEAPLSIP 107
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 312 RRRPFIGSQ-LDECRDASGLFYILPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLI 488
+R+ + GSQ L+ RD + + P + G + +WD VWD F + C ++ + P++
Sbjct: 66 KRKLYTGSQALNFRRDQMEI--LSPTKDGIVTDWDMVDNVWDHAF-RNCLMIDPTEHPML 122
Query: 489 ITEPLFNLPQ 518
+ EP N Q
Sbjct: 123 LAEPPLNSQQ 132
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 327 IGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLF 506
+G E R + Y P G + NWD + VWD F E +N +D +++T+P
Sbjct: 55 VGETCSELRHQLDINY--PVHNGIVQNWDDMEHVWDHAFYNE-LKINPSDCKILLTDPPL 111
Query: 507 N 509
N
Sbjct: 112 N 112
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 381 PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
P + G + NWD + +W + F E V+ + P+++TE +N
Sbjct: 61 PMEHGIVNNWDDMEKIWHYTFYNE-LRVDPEEHPVLLTEAPYN 102
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 32.7 bits (71), Expect = 0.20
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 309 ERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLI 488
+ + F+G + R L Y P + G + NWD + +W F E + + P++
Sbjct: 51 DEKDTFVGDEAQARRGILSLKY--PIEHGVVSNWDDMEKIWHHTFYNE-LRLEPEEHPIL 107
Query: 489 ITEPLFN 509
+TE N
Sbjct: 108 LTEAPLN 114
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPILLTEAPLN 113
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPILLTEAPLN 113
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLN 113
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E + + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNE-LRIAPEEHPVLLTEAPLN 113
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E + + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNE-LRIAPEEHPVLLTEAPLN 113
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 31.1 bits (67), Expect = 0.61
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
DE + G+ + P + G + NWD + +W F E + + P+++TE N
Sbjct: 58 DEAQSKRGILTLKYPIEHGVVSNWDDMEKIWHHTFYNE-LRIAPEEHPVLLTEAPLN 113
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 342 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITEPLFN 509
D+ SG+ + P + G + NWD + +W F E V + P+++TE N
Sbjct: 13 DDAEARSGILTLDYPMEHGVVSNWDDMEKIWYHTFYSE-LRVAPEEHPVLLTEAPLN 68
>At2g34380.1 68415.m04209 expressed protein
Length = 509
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 276 IIPNCIMKAKSERRRPFI-GSQLDECRDASGLFYI--LPFQKGFLVNWDTQKTVW 431
IIP +K E+R F G+ + E DAS LF LPF K + NW VW
Sbjct: 405 IIPTACLKIMIEQRAEFRPGAGIPEIYDAS-LFLESKLPFLKRIIWNWRKTLFVW 458
>At5g47480.1 68418.m05863 expressed protein
Length = 1350
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 494 GYDQRGVIEVDWAAFFAEYEVPDG 423
G GV EVDW +F+A+ V DG
Sbjct: 137 GSGSPGVKEVDWGSFYADSSVNDG 160
>At4g17480.1 68417.m02614 palmitoyl protein thioesterase family
protein
Length = 304
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 452 FFAEYEVPDGFLSVPID*KSFLEGQDVEQS*SVTTLVKLRANERATSLRFR---LHNAI 285
F ++ P G++ +P D K +L E S + + R NER T+ + R LHN +
Sbjct: 156 FVQDHIAPSGYIKIPTDIKDYL-----EHSKYLPKINNERPNERNTTFKDRFTSLHNLV 209
>At2g27490.2 68415.m03323 dephospho-CoA kinase family similar to
Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A
kinase). (Swiss-Prot:Q92BF2) [Listeria innocua];
contains Pfam profile PF01121: Dephospho-CoA kinase
Length = 232
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +2
Query: 170 PVTFK*KLRK*ARPLVIYWTTEPIRLKLVLQ 262
P+ F+ K+ K +P+V+ W ++ +LK +++
Sbjct: 115 PLLFEVKMDKWTKPIVVVWVSQETQLKRLME 145
>At2g27490.1 68415.m03322 dephospho-CoA kinase family similar to
Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A
kinase). (Swiss-Prot:Q92BF2) [Listeria innocua];
contains Pfam profile PF01121: Dephospho-CoA kinase
Length = 232
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +2
Query: 170 PVTFK*KLRK*ARPLVIYWTTEPIRLKLVLQ 262
P+ F+ K+ K +P+V+ W ++ +LK +++
Sbjct: 115 PLLFEVKMDKWTKPIVVVWVSQETQLKRLME 145
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,568
Number of Sequences: 28952
Number of extensions: 241244
Number of successful extensions: 431
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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