Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20376
         (553 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.14 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.3  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   4.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   5.4  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 411 ETLGRIINVIGEPIDERGPIPTEKTAAIHAEAP---SLSTCLCSR 536
           +TLG   N I EP+ +     T+K ++  A AP    L+T LC++
Sbjct: 380 QTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLTTTLCTK 424


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 418 RVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRR 275
           RV  P G + G P +    PRT  S   +A ++  F+   + T   R+
Sbjct: 213 RVKKP-GAKQGAPTAEEKRPRTAFSGAQLARLKHEFAENRYLTERRRQ 259



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 421 PRVSAPTGIRMGEP 380
           PR+S+P+  + G P
Sbjct: 70  PRISSPSSTKSGSP 83


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 317 SSDHCHGRY*RLSPWATCTRLW 382
           S++HC   Y       +CTR W
Sbjct: 95  STEHCDWLYGIFGHETSCTRYW 116


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -1

Query: 379 ESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSGHL 245
           E++T CP  K +V     V++  +   W T+ +   D   T   +
Sbjct: 122 ENTTNCPEQKNTVTVTFTVQSDDTTLNWGTNESYNLDLTTTGNQI 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,117
Number of Sequences: 336
Number of extensions: 2933
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)