Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20376
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 130 1e-31
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 49 5e-07
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 38 0.001
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.4
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.2
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 4.2
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.2
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 25 5.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 5.6
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 7.4
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 25 9.8
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 9.8
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 9.8
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 9.8
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 130 bits (315), Expect = 1e-31
Identities = 62/79 (78%), Positives = 69/79 (87%)
Frame = +3
Query: 276 RLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPID 455
RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IPVG TLGRI+NVIGEP+D
Sbjct: 91 RLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVD 150
Query: 456 ERGPIPTEKTAAIHAEAPS 512
ERGPI K + IHA+APS
Sbjct: 151 ERGPIKAVKYSPIHADAPS 169
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +1
Query: 211 DVQFED--NLPPILNALRCKI 267
D QFED +LP ILNAL K+
Sbjct: 66 DCQFEDADSLPSILNALEVKL 86
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 48.8 bits (111), Expect = 5e-07
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 291 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 467
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 468 IPTEKTAAIHAEAPSL 515
I T + + +AP +
Sbjct: 149 IKTTERRRVQLKAPGI 164
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 282 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 458
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117
Query: 459 RGP 467
+GP
Sbjct: 118 KGP 120
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 466 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 332
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 92 NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 202
NPF N ++S+++MP L+NLQE + + P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 342 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 458
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 472 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 329
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 5.6
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +3
Query: 273 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 452
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 453 DERGPIPTEKTAAIHAEA 506
+R P +K A + A
Sbjct: 62 -QRCPFEHKKVVARYHRA 78
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 406 PTGIRMGEPESSTGCPRTKPSVPSMAMV 323
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 267 RSPRLVLEVAQHLGENTVRTIAMD 338
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 450 IDERGPIPTEKTAAIHAEAPSLSTCLC 530
I+E P+ T T +HA A + LC
Sbjct: 132 IEEAYPVKTGDTVVVHAAAGGVGLLLC 158
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 22 FLKMLGAISRVGSGILAVKSVAEKSLSECGKIVAVNAVNKRDY 150
F+K++ ++ G+G+LA+ VA+ ++ N + KRDY
Sbjct: 11 FIKLVSSLQYTGNGVLALDFVAKTFPNQ------ENQLEKRDY 47
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 457 SSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKP-SVPSMAMVRT-VFSP 305
S IG P T + P G+ P S+ PR+K ++ ++VRT ++ P
Sbjct: 149 SKIGPPSTSHFQILADTPRGLVPLLPPPSSSIPRSKAVTIEDPSIVRTNIYDP 201
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 9.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 318 VRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPID 455
++ + DG G+ + + D+ P P E LGR+I V PID
Sbjct: 1 MKAVIADGQNGV---EVISDAPKPT--PEKGEFLGRVIRVAFNPID 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,233
Number of Sequences: 5004
Number of extensions: 47417
Number of successful extensions: 145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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