Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20376
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               152   2e-37
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   6e-05
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   1.4  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)               27   7.7  
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  152 bits (369), Expect = 2e-37
 Identities = 70/85 (82%), Positives = 78/85 (91%)
 Frame = +3

Query: 255 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 434
           EV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G PI IPVG ETLGRIIN
Sbjct: 100 EVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPITIPVGPETLGRIIN 159

Query: 435 VIGEPIDERGPIPTEKTAAIHAEAP 509
           VIGEPIDERGP+ T+K AAIHAEAP
Sbjct: 160 VIGEPIDERGPVETDKRAAIHAEAP 184



 Score = 31.1 bits (67), Expect = 0.63
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 211 DVQFEDNLPPILNALRCKIDLP 276
           DVQF+++LPPILNAL  +   P
Sbjct: 85  DVQFDEDLPPILNALEVENRTP 106


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +3

Query: 327 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTEKTAAIHAE 503
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP    + A +  +
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGPTGGTR-ARVGVK 70

Query: 504 APSL 515
           AP +
Sbjct: 71  APGI 74


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 25/77 (32%), Positives = 29/77 (37%)
 Frame = -1

Query: 466 GPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATS 287
           GP SS+  P T    P    PTG+ M  P S    P   P  P M       SP     +
Sbjct: 684 GPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGMGTHPQQVSP---GQT 737

Query: 286 STRRGDRFCTSGHLESE 236
           S    D F   G +E E
Sbjct: 738 SILADDGFSGVGFVEQE 754


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 445 SPITLMMRPRV-SAPTGIRMGEPESSTG 365
           S +T   +P   SAPTGI  G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 381 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 476
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_48623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 397 SRWELKPSDASSM*SANRLTSAVPSPPRRLLLFMLKLRVCRHVC 528
           S W+L+  D + +    R+T A  +  +   +  L LRVC H+C
Sbjct: 111 SMWDLESCDLARVMLIVRITHATFASLKLRRISKLSLRVCIHIC 154


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 360 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 467
           GQP  D+G P     G   +  G+++N  GEP++  GP
Sbjct: 94  GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130


>SB_37000| Best HMM Match : Astacin (HMM E-Value=5.5e-19)
          Length = 1341

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 237 RQVIFELHIYHSTDNGNNLTLAF 169
           RQ     H +HS D+ NNLT AF
Sbjct: 518 RQPYVTTHNHHSHDHNNNLTTAF 540


>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1228

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 548 LRESPAAQTCRQTRSFSMNSSSLLGGDGTALVN 450
           +  SP   TC   ++ SMN  ++L GD    VN
Sbjct: 355 MENSPQCMTCIPWKANSMNEDTILFGDDQGYVN 387


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,899,087
Number of Sequences: 59808
Number of extensions: 383651
Number of successful extensions: 938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)