Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20376
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   143   7e-35
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    49   2e-06
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    49   2e-06
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    38   0.004
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    33   0.18 
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    32   0.32 
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    29   2.2  
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    29   2.9  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor prote...    27   6.8  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  143 bits (347), Expect = 7e-35
 Identities = 67/85 (78%), Positives = 75/85 (88%)
 Frame = +3

Query: 255 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 434
           EV  RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+IPVG ETLGRI+N
Sbjct: 96  EVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMN 155

Query: 435 VIGEPIDERGPIPTEKTAAIHAEAP 509
           VIGEPIDERGPI ++  AAIHAEAP
Sbjct: 156 VIGEPIDERGPIASKNFAAIHAEAP 180



 Score = 31.1 bits (67), Expect = 0.55
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 211 DVQFEDNLPPILNAL 255
           DVQF++NLPPILN L
Sbjct: 81  DVQFDENLPPILNGL 95



 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = +2

Query: 509 EFVDMSVQQEILVTG 553
           EFV+MSV+QEILVTG
Sbjct: 181 EFVEMSVEQEILVTG 195


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 41/75 (54%)
 Frame = +3

Query: 291 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 470
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 471 PTEKTAAIHAEAPSL 515
              + + +  +AP +
Sbjct: 123 ANARRSRVEVKAPGI 137


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 41/75 (54%)
 Frame = +3

Query: 291 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 470
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 471 PTEKTAAIHAEAPSL 515
              + + +  +AP +
Sbjct: 150 ANARRSRVEVKAPGI 164


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = +3

Query: 252 PEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRI 428
           P+   RS + VLE+++    N       +GT G+     + + +G  +R PV  + LGRI
Sbjct: 59  PDGSKRSGQ-VLEISK----NKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRI 113

Query: 429 INVIGEPIDERGPIPTEKTAAIHAE 503
            N  G+PID+  P+  E    I+ +
Sbjct: 114 FNGSGKPIDKGPPVLAEDFLDINGQ 138


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 378 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTEKTAAIHAE 503
           +G   R PV  + LGRI N  G+PID+  P+  E    I+ +
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQ 150


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 342 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 458
           T G+  G PVL +G P+ + +G   +G I + I  P+ +
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 435 VIGEPIDERGPIPTEKTAAIHAEAPSL 515
           V+G PID +GPI   + + +  +AP +
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGI 129


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 336 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDE 458
           D  +G + G+P+ +D G  ++ P G E + ++ N  GEP+DE
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 451 IGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFS 308
           +G P   + RP    P+        S+TG  RT+P+VP+++  R + S
Sbjct: 284 LGIPAPAVPRPVAGKPST----RSASTTGAARTRPAVPAVSAPRALTS 327


>Z50109-13|CAD44092.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 LGRIINVIGEPIDERGPIPTEKTAAIHAEAPSLSTCL 527
           + ++INVI  PI+E  P  T++ A I +    L TCL
Sbjct: 42  VSQLINVI-VPINEFSPAFTKRLAKITSNLDGLETCL 77


>Z50109-12|CAD44091.1| 1583|Caenorhabditis elegans Hypothetical
           protein F45E10.1a protein.
          Length = 1583

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 LGRIINVIGEPIDERGPIPTEKTAAIHAEAPSLSTCL 527
           + ++INVI  PI+E  P  T++ A I +    L TCL
Sbjct: 42  VSQLINVI-VPINEFSPAFTKRLAKITSNLDGLETCL 77


>Z50109-10|CAD89729.3| 1654|Caenorhabditis elegans Hypothetical
           protein F45E10.1c protein.
          Length = 1654

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 LGRIINVIGEPIDERGPIPTEKTAAIHAEAPSLSTCL 527
           + ++INVI  PI+E  P  T++ A I +    L TCL
Sbjct: 42  VSQLINVI-VPINEFSPAFTKRLAKITSNLDGLETCL 77


>Z47810-5|CAD44133.1| 1549|Caenorhabditis elegans Hypothetical
           protein F45E10.1b protein.
          Length = 1549

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 LGRIINVIGEPIDERGPIPTEKTAAIHAEAPSLSTCL 527
           + ++INVI  PI+E  P  T++ A I +    L TCL
Sbjct: 42  VSQLINVI-VPINEFSPAFTKRLAKITSNLDGLETCL 77


>Z47810-4|CAD44132.1| 1583|Caenorhabditis elegans Hypothetical
           protein F45E10.1a protein.
          Length = 1583

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 LGRIINVIGEPIDERGPIPTEKTAAIHAEAPSLSTCL 527
           + ++INVI  PI+E  P  T++ A I +    L TCL
Sbjct: 42  VSQLINVI-VPINEFSPAFTKRLAKITSNLDGLETCL 77


>Z47810-2|CAD89730.3| 1654|Caenorhabditis elegans Hypothetical
           protein F45E10.1c protein.
          Length = 1654

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 LGRIINVIGEPIDERGPIPTEKTAAIHAEAPSLSTCL 527
           + ++INVI  PI+E  P  T++ A I +    L TCL
Sbjct: 42  VSQLINVI-VPINEFSPAFTKRLAKITSNLDGLETCL 77


>U23521-5|AAC46813.2|  250|Caenorhabditis elegans Hypothetical
           protein F41C3.6 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 319 FGPLPWTVLKA*SVGNLYSTLAHPFVSRWELKPS 420
           FG   +TV  A    NLYS  +   VS W+LKP+
Sbjct: 168 FGSSEYTVDVACDEENLYSLTSAGVVSVWKLKPN 201


>AF504312-1|AAM22693.1| 1583|Caenorhabditis elegans adaptor protein
           UNC-53 protein.
          Length = 1583

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 LGRIINVIGEPIDERGPIPTEKTAAIHAEAPSLSTCL 527
           + ++INVI  PI+E  P  T++ A I +    L TCL
Sbjct: 42  VSQLINVI-VPINEFSPAFTKRLAKITSNLDGLETCL 77


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 144 PLVNGIDCNDFSTF 103
           PLVNG+ C D STF
Sbjct: 594 PLVNGLACKDLSTF 607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,138,040
Number of Sequences: 27780
Number of extensions: 281850
Number of successful extensions: 744
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)