Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20376
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.3  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 4   HELSS*FLKMLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 129
           H +    + MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 52  HGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 22  FLKMLGAISRVGSGILAVKSVAEKSLSEC 108
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 4   HELSS*FLKMLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 129
           H +    + MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 18  HGILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 267 RSPRLVLEVAQHLGENTVRTIAMDGTE 347
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 336 DGTEGLVRGQPVLDSGSPI 392
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,843
Number of Sequences: 438
Number of extensions: 3220
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)