Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20376
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 125 2e-29
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 125 2e-29
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 125 2e-29
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 45 3e-05
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 36 0.024
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 36 0.024
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 35 0.031
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 35 0.031
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 35 0.031
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 29 2.7
At5g39880.1 68418.m04837 expressed protein 27 8.3
At2g33100.1 68415.m04058 cellulose synthase family protein simil... 27 8.3
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 125 bits (302), Expect = 2e-29
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +3
Query: 255 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 434
EVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+N
Sbjct: 112 EVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171
Query: 435 VIGEPIDERGPIPTEKTAAIHAEAPSL 515
V+GEPIDERG I TE IH +AP+L
Sbjct: 172 VLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 125 bits (302), Expect = 2e-29
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +3
Query: 255 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 434
EVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+N
Sbjct: 115 EVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 174
Query: 435 VIGEPIDERGPIPTEKTAAIHAEAPSL 515
V+GEPIDERG I TE IH +AP+L
Sbjct: 175 VLGEPIDERGEIKTEHYLPIHRDAPAL 201
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 125 bits (302), Expect = 2e-29
Identities = 59/87 (67%), Positives = 71/87 (81%)
Frame = +3
Query: 255 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 434
EVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+N
Sbjct: 112 EVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171
Query: 435 VIGEPIDERGPIPTEKTAAIHAEAPSL 515
V+GEPIDERG I TE IH +AP+L
Sbjct: 172 VLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 291 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 470
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 471 PTEKTAAIHAEAPSL 515
+ + +AP +
Sbjct: 394 SDHEQRRVEVKAPGI 408
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTE 479
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI E
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPE 121
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.5 bits (78), Expect = 0.024
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTE 479
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI E
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPE 121
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 35.1 bits (77), Expect = 0.031
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTE 479
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI E
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPE 120
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 35.1 bits (77), Expect = 0.031
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTE 479
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI E
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPE 120
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 35.1 bits (77), Expect = 0.031
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 306 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTE 479
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI E
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPE 120
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -3
Query: 455 VNRFADY--IDDASEGFSSHRDTNG*ARVEYRLPTD*AFSTVHGNG 324
VNR DY ID + +GF S NG + + +LPTD A T NG
Sbjct: 85 VNR-VDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNG 129
>At5g39880.1 68418.m04837 expressed protein
Length = 363
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 119 LQSMPLTRGTMLLNLQEKAKVRLLPLSVLW*MCNSKITCL 238
LQ++P T T +LN +E++ + ++ MC +T L
Sbjct: 44 LQTLPFTEITEILNRKERSAPKTPEFKAMFTMCKGYVTYL 83
>At2g33100.1 68415.m04058 cellulose synthase family protein similar
to gi:2827143 from Arabidopsis thaliana (Ath-B)
Length = 1036
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 397 IRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDR 266
++ G P + PR P++A V S CW +T GDR
Sbjct: 689 VKNGRPPGALLLPRPPLDAPTVAEAIAVIS--CWYEDNTEWGDR 730
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,550,350
Number of Sequences: 28952
Number of extensions: 268439
Number of successful extensions: 687
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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