Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20372
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 102 3e-22
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 102 3e-22
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 99 2e-21
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 73 1e-13
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 73 1e-13
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 73 1e-13
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 47 1e-05
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 47 1e-05
AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical ... 39 0.004
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 31 0.60
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 31 0.60
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 31 0.60
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 31 1.0
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 29 2.4
Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical p... 29 3.2
AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical... 29 3.2
Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 29 4.2
L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome asse... 28 5.6
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 28 5.6
Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical pr... 28 7.4
U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain (pr... 28 7.4
AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical ... 28 7.4
Z81546-3|CAB04451.1| 321|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical p... 27 9.8
AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical ... 27 9.8
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 27 9.8
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 27 9.8
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 102 bits (244), Expect = 3e-22
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = +1
Query: 502 QKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVH 681
+KMLS D+NPPID+LI +GILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+
Sbjct: 90 RKMLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVN 148
Query: 682 AGAVPV 699
AGAVP+
Sbjct: 149 AGAVPL 154
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 SSEKPLHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 418
SS + + NA + + + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKEQIG--KEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPP 59
Query: 419 ATTD--LDELVMNAANAENPEAQLAAVQQCRK 508
D L L + AA + +P QL AVQQ RK
Sbjct: 60 GPFDANLLRLTVAAAQSSDPAEQLTAVQQARK 91
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 102 bits (244), Expect = 3e-22
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = +1
Query: 502 QKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVH 681
+KMLS D+NPPID+LI +GILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+
Sbjct: 90 RKMLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVN 148
Query: 682 AGAVPV 699
AGAVP+
Sbjct: 149 AGAVPL 154
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 SSEKPLHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 418
SS + + NA + + + +RNE V +RK+KREE + KRRN+ D E
Sbjct: 2 SSNRQAYYKNNAKEQIG--KEKRNEEVVSIRKDKREEAISKRRNINTQIEDDSETSTTPP 59
Query: 419 ATTD--LDELVMNAANAENPEAQLAAVQQCRK 508
D L L + AA + +P QL AVQQ RK
Sbjct: 60 GPFDANLLRLTVAAAQSSDPAEQLTAVQQARK 91
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 99 bits (238), Expect = 2e-21
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = +1
Query: 508 MLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAG 687
MLS D+NPPID+LI +GILP+LVQCLS D P LQFE AWALTNIASGTS QT VV+AG
Sbjct: 1 MLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWALTNIASGTSEQTQAVVNAG 59
Query: 688 AVPV 699
AVP+
Sbjct: 60 AVPL 63
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1
Query: 481 VGCCATMQKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSA 660
V C +++K LS KNPPIDE+I G+L LVQ LS +N +Q+E AWALTNI SG++
Sbjct: 107 VRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQALS-VENERVQYEAAWALTNIVSGSTE 165
Query: 661 QTNKVVHAG 687
QT V AG
Sbjct: 166 QTIAAVEAG 174
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 487 CCATMQKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIA-SGTSAQ 663
CC + +++ + I ++ A +LP+L+ L D+ QFE +WAL+N+A GT+ Q
Sbjct: 365 CCWLVSNIIAGTQKQ-IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQGGTNRQ 422
Query: 664 TNKVVHAGAVP 696
++ VP
Sbjct: 423 VVAMLEDNVVP 433
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 254 LHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 373
L +KN K +E+RRRR E +VE+RK K + + KRRN+
Sbjct: 22 LQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNI 60
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 544 LIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPV 699
+I G L ++ + + + ++ E W ++NI +GT Q V+ A +PV
Sbjct: 340 VIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPV 391
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1
Query: 481 VGCCATMQKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSA 660
V C +++K LS KNPPIDE+I G+L LVQ LS +N +Q+E AWALTNI SG++
Sbjct: 107 VRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQALS-VENERVQYEAAWALTNIVSGSTE 165
Query: 661 QTNKVVHAG 687
QT V AG
Sbjct: 166 QTIAAVEAG 174
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 487 CCATMQKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIA-SGTSAQ 663
CC + +++ + I ++ A +LP+L+ L D+ QFE +WAL+N+A GT+ Q
Sbjct: 365 CCWLVSNIIAGTQKQ-IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQGGTNRQ 422
Query: 664 TNKVVHAGAVP 696
++ VP
Sbjct: 423 VVAMLEDNVVP 433
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 254 LHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 373
L +KN K +E+RRRR E +VE+RK K + + KRRN+
Sbjct: 22 LQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNI 60
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 544 LIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPV 699
+I G L ++ + + + ++ E W ++NI +GT Q V+ A +PV
Sbjct: 340 VIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPV 391
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 73.3 bits (172), Expect = 1e-13
Identities = 37/69 (53%), Positives = 47/69 (68%)
Frame = +1
Query: 481 VGCCATMQKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSA 660
V C +++K LS KNPPIDE+I G+L LVQ LS +N +Q+E AWALTNI SG++
Sbjct: 107 VRCFESLRKSLSKTKNPPIDEVIHCGLLQALVQALS-VENERVQYEAAWALTNIVSGSTE 165
Query: 661 QTNKVVHAG 687
QT V AG
Sbjct: 166 QTIAAVEAG 174
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 487 CCATMQKMLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIA-SGTSAQ 663
CC + +++ + I ++ A +LP+L+ L D+ QFE +WAL+N+A GT+ Q
Sbjct: 365 CCWLVSNIIAGTQKQ-IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQGGTNRQ 422
Query: 664 TNKVVHAGAVP 696
++ VP
Sbjct: 423 VVAMLEDNVVP 433
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 254 LHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 373
L +KN K +E+RRRR E +VE+RK K + + KRRN+
Sbjct: 22 LQQYKNLTKH-EELRRRRTECSVEIRKQKGADMMMKRRNI 60
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +1
Query: 544 LIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPV 699
+I G L ++ + + + ++ E W ++NI +GT Q V+ A +PV
Sbjct: 340 VIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPV 391
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +2
Query: 239 SSEKPLHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 418
S E+ ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 8 SHEERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 37/60 (61%)
Frame = +2
Query: 239 SSEKPLHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 418
S E+ ++K+ +D +EMRR+R E V++RKN+R+E ++ R + + S EE + L
Sbjct: 8 SHEERSKMYKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITVQRSLSHEETSELL 67
>AF024493-2|AAB70323.1| 322|Caenorhabditis elegans Hypothetical
protein F23F1.5 protein.
Length = 322
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +2
Query: 263 FKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 439
+KN K ++ +RR E T+E +KN R +T K RN+ T +E+ ++ + TT ++
Sbjct: 32 YKNLTKAAEQQAKRREE-TLERQKNGRFDTFMKLRNLAFDDVTSDEDDEQKIETTTAEK 89
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 31.5 bits (68), Expect = 0.60
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 206 RDSEHR*NGD*SSEKPLHVFKNAGKDVDEMRR---RRNEVTVELRKNKREETLQKRRNVP 376
RD HR K + + +D D+ RR RR++V + R+ KREE ++
Sbjct: 561 RDRSHRDVRSSGRSKDIKASSSHRRDRDDARRKDRRRDDVRKKERREKREEEDDDQKTKD 620
Query: 377 ISYSTDEEEID 409
+ S DE+EID
Sbjct: 621 -AESKDEDEID 630
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/83 (21%), Positives = 44/83 (53%)
Frame = +2
Query: 269 NAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVM 448
++ D EM RRR + + K +++ +++R V S S DE+E +K + + +
Sbjct: 246 DSSDDDSEMERRRKKSKKSKKSKKFKKSEKRKRAVNDSSSDDEDEEEKPEKRSKKSKKAV 305
Query: 449 NAANAENPEAQLAAVQQCRKCSR 517
+++E+ E + ++ ++ +K +
Sbjct: 306 IDSSSEDEEEEKSSKKRSKKSKK 328
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 332 KNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 463
+ +R + +KR++ S T +EE ++LATTD + V+N A++
Sbjct: 260 ERERARSRRKRKDEASSAVTSDEEDQEDLATTDSENPVINGASS 303
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 338 KREETLQKRRNVPIS--YSTDEEEIDKNLATTDLDE 439
K+E+ KR NVP++ YS + KN +TT L E
Sbjct: 98 KKEDDKSKRENVPLTVVYSNPSISVSKNFSTTPLAE 133
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
F53B7.5a protein.
Length = 3095
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 513 EHFLHCCTAANCASGFSALAAFITSSSRSVVARFLSIS 400
EHF CC+ S + L ++ T SS V A FL S
Sbjct: 2962 EHFATCCSLLEVESSCTDLCSYSTYSSEEVSAVFLQQS 2999
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 513 EHFLHCCTAANCASGFSALAAFITSSSRSVVARFLSIS 400
EHF CC+ S + L ++ T SS V A FL S
Sbjct: 2962 EHFATCCSLLEVESSCTDLCSYSTYSSEEVSAVFLQQS 2999
>Z99710-12|CAI79158.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 634 LKPKRSRTVTLDCQPSKGTELGWGVFQQL 548
LKPK SRT+ + +K +E+ W + + +
Sbjct: 24 LKPKHSRTIIVGTHKAKSSEMFWNLLESI 52
>AL034393-28|CAI79175.1| 333|Caenorhabditis elegans Hypothetical
protein Y18D10A.22 protein.
Length = 333
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 634 LKPKRSRTVTLDCQPSKGTELGWGVFQQL 548
LKPK SRT+ + +K +E+ W + + +
Sbjct: 24 LKPKHSRTIIVGTHKAKSSEMFWNLLESI 52
>Z79755-7|CAB02103.1| 466|Caenorhabditis elegans Hypothetical
protein F43G9.10 protein.
Length = 466
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 266 KNAGKDVDEMRRRRNEVTVE--LRKNKREETLQKRRNV--PISYSTDEEEIDKNLATTDL 433
+ +D D RRRR E + E R+++R E +RR V P E+E +N ++
Sbjct: 69 RETDRDDDRRRRRRRESSDEEDRRRHRRHEDYGRRRQVEKPEVLGKVEDESSENEQESEE 128
Query: 434 DE 439
DE
Sbjct: 129 DE 130
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 547 IAAGILPILVQCLSRADNPALQFETAWALTNIASGTSA 660
+ + L IL++ L R+ N L +T WA+ NIA+ S+
Sbjct: 80 VNSNCLDILIK-LVRSQNARLSSQTVWAIANIAADCSS 116
>L23645-8|AAK26133.1| 282|Caenorhabditis elegans Peroxisome
assembly factor protein19 protein.
Length = 282
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = +2
Query: 266 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELV 445
+ A KD +M + + E K + + P+ D E + A L E
Sbjct: 56 QKAAKDFQKMLEQMVTLQEEAMKKAGADPSEGEGEQPLD-PNDPEALAMMDALKQLMECS 114
Query: 446 MNAANAENPEAQLAAVQQCR 505
N ANA NPE +A + R
Sbjct: 115 SNVANASNPEEFMAGLDMLR 134
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 287 DEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDK 412
DE R ++++ E R+ K EE +K + D+E+IDK
Sbjct: 1057 DEERAKKDKRDAEERRKKDEERAKKDKEDAKKAKEDQEKIDK 1098
>Z81552-3|CAB04486.1| 470|Caenorhabditis elegans Hypothetical
protein F56G4.4 protein.
Length = 470
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +2
Query: 245 EKPLHVFKNAGKDVDEMR---RRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKN 415
+KP + FK K+ + + RRR + T +R ++ +V S ++EE +
Sbjct: 278 DKPNNKFKKLTKEEKKAQWEERRRQKDTERAEDEERRREAEEDEDVSDEESDEDEEEFEI 337
Query: 416 LATTDLDELVMNAANAENPEAQL 484
+ T + + LV+ ++ P +L
Sbjct: 338 IGTPEREALVLREHSSTPPPEEL 360
>U70854-5|AAB09157.1| 589|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 11 protein.
Length = 589
Score = 27.9 bits (59), Expect = 7.4
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Frame = +2
Query: 266 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD--------EEEIDKNLA 421
K G+D E R + E + ++EE + R+ V I+Y+ D E++ K+ A
Sbjct: 245 KERGEDRYERREMEKQNKAERERRRKEEAKRIRKLVDIAYAKDPRIIKFKKEQQAKKDKA 304
Query: 422 TTDLDELV---MNAANAENPEAQLAAVQQCRKCSRVIK 526
D + A + E E + A +Q + R K
Sbjct: 305 KEDKQRAIREKQEAIDREKREKEEAEAKQKEEADRKAK 342
>AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical
protein Y38C1AA.9 protein.
Length = 174
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +2
Query: 254 LHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDL 433
+H K +VD++ + VE+ + EE K+R V + +E + + + A L
Sbjct: 20 IHAEKVHVIEVDDVGNKTISGEVEISDVEAEEKTDKKREVDANDIQEEVKAELDKAVESL 79
Query: 434 DELVMNAANAENPEAQLAAVQQC 502
E EN ++++ C
Sbjct: 80 KETAREREEEENSLLSRSSLESC 102
>Z81546-3|CAB04451.1| 321|Caenorhabditis elegans Hypothetical
protein F53A2.3 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 224 ICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLTS 93
+ RCL +V G +NI LL + + ++ H S G+T+
Sbjct: 265 LLVRCL-SVTGGDNSSNAVNISLLFKQHVSNLFNHARSKSGITN 307
>Z75547-11|CAA99905.4| 394|Caenorhabditis elegans Hypothetical
protein R11D1.10a protein.
Length = 394
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +2
Query: 278 KDVDEMRRRRNEVTVELRKNKREETLQKRR-----NVPISYSTDEEEIDKNLATTDLDEL 442
KD DE+ RR ++ + ++ RE+ R N S +T EE + N D ++
Sbjct: 218 KDWDELEARRRKIFEDEKEKNREDDASIRESMVSANTEFSEATKEEMNEINNILQDAEQR 277
Query: 443 VMNAANAENPEA 478
V E +A
Sbjct: 278 VAETKKQEEHDA 289
>AF047661-2|AAK71389.1| 886|Caenorhabditis elegans Hypothetical
protein M70.3b protein.
Length = 886
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 544 LIAAGILPILVQCLSRADNPALQFETA 624
LI GIL I V C+S +P+ Q ETA
Sbjct: 6 LIIIGILLISVFCISSGSSPSKQSETA 32
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 HVFKNAGKDVDEMRRRRNEVTVELRK-NKREETLQKRRNVPISYSTDEEEI 406
H KNA D+ E +RR E+ E ++ + R + K N + S + +++
Sbjct: 822 HKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQKSAENDKM 872
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 HVFKNAGKDVDEMRRRRNEVTVELRK-NKREETLQKRRNVPISYSTDEEEI 406
H KNA D+ E +RR E+ E ++ + R + K N + S + +++
Sbjct: 834 HKLKNAESDLQEAKRRAEEIGAEKKELSDRLNEMLKNLNQSMQKSAENDKM 884
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,597
Number of Sequences: 27780
Number of extensions: 359881
Number of successful extensions: 1408
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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