Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20371
(544 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein. 96 8e-22
AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein. 96 8e-22
AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein. 96 8e-22
AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein. 96 8e-22
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 23 6.5
>AY334011-1|AAR01136.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 95.9 bits (228), Expect = 8e-22
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +3
Query: 255 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 434
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +LN L+ +S +T
Sbjct: 75 VVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTT 134
Query: 435 SLRFDGALNVDLTEFQTNLVPYPRI 509
LRF G LN DL + N+VP+PR+
Sbjct: 135 CLRFPGQLNADLRKLAVNMVPFPRL 159
Score = 51.6 bits (118), Expect = 2e-08
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +1
Query: 34 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 213
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 214 LEFAIYPAPQV 246
+++ P+P+V
Sbjct: 61 NTYSVVPSPKV 71
>AY334010-1|AAR01135.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 95.9 bits (228), Expect = 8e-22
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +3
Query: 255 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 434
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +LN L+ +S +T
Sbjct: 75 VVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTT 134
Query: 435 SLRFDGALNVDLTEFQTNLVPYPRI 509
LRF G LN DL + N+VP+PR+
Sbjct: 135 CLRFPGQLNADLRKLAVNMVPFPRL 159
Score = 51.6 bits (118), Expect = 2e-08
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +1
Query: 34 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 213
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 214 LEFAIYPAPQV 246
+++ P+P+V
Sbjct: 61 NTYSVVPSPKV 71
>AY334009-1|AAR01134.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 95.9 bits (228), Expect = 8e-22
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +3
Query: 255 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 434
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +LN L+ +S +T
Sbjct: 75 VVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTT 134
Query: 435 SLRFDGALNVDLTEFQTNLVPYPRI 509
LRF G LN DL + N+VP+PR+
Sbjct: 135 CLRFPGQLNADLRKLAVNMVPFPRL 159
Score = 51.6 bits (118), Expect = 2e-08
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +1
Query: 34 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 213
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 214 LEFAIYPAPQV 246
+++ P+P+V
Sbjct: 61 NTYSVVPSPKV 71
>AY334008-1|AAR01133.1| 188|Anopheles gambiae beta-tubulin protein.
Length = 188
Score = 95.9 bits (228), Expect = 8e-22
Identities = 40/85 (47%), Positives = 58/85 (68%)
Frame = +3
Query: 255 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 434
VVEPYN+ L+ H +E++D + +DNEA+YDIC R L + P+Y +LN L+ +S +T
Sbjct: 75 VVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKVPNPSYGDLNHLVSLTMSGVTT 134
Query: 435 SLRFDGALNVDLTEFQTNLVPYPRI 509
LRF G LN DL + N+VP+PR+
Sbjct: 135 CLRFPGQLNADLRKLAVNMVPFPRL 159
Score = 51.6 bits (118), Expect = 2e-08
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +1
Query: 34 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSK 213
HYT G E+VD VLD +RK + C LQGF + H LL+ ++ +Y +
Sbjct: 1 HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIM 60
Query: 214 LEFAIYPAPQV 246
+++ P+P+V
Sbjct: 61 NTYSVVPSPKV 71
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 23.0 bits (47), Expect = 6.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 105 GTLVSELADSVQNQIYDFLSNGVVTTGIVVGRLV 4
GTL+ E + YD L N V I G+ +
Sbjct: 2912 GTLIKEEVGKWKQIGYDVLKNDVTQDAITAGKAI 2945
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 544,227
Number of Sequences: 2352
Number of extensions: 10728
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50040333
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -