Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20371
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 77  ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WS 181
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 469 SPSSRLTWCLTPVSLPT 519
           +P+ ++TW L   +LPT
Sbjct: 448 NPTPQVTWALDGFALPT 464


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 469 SPSSRLTWCLTPVSLPT 519
           +P+ ++TW L   +LPT
Sbjct: 448 NPTPQVTWALDGFALPT 464


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,375
Number of Sequences: 438
Number of extensions: 2610
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)