Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20370
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 30 0.24
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 27 2.9
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 5.1
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 5.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 5.1
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.1
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 5.1
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 6.8
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 25 6.8
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 6.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 6.8
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 9.0
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 9.0
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 9.0
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 25 9.0
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 25 9.0
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass... 25 9.0
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.24
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +2
Query: 170 LVSR*NASTLTKQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQN 349
L ++ S LTK + Q+Q T++ T + +TP K S++ T+ A K+ K++ +
Sbjct: 31 LATKPQKSKLTKLGKQKQRQKQKNTKKDT--LVNRETPSKKSQKLETSDALKS--KSKDS 86
Query: 350 NNKRPKV--QTGDPKL 391
+ K P V + G PK+
Sbjct: 87 SKKEPVVVPKKGTPKI 102
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = +2
Query: 185 NASTLTKQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADK----KNEQNN 352
N + ++G + + A +K P P KR+ T K K K E +
Sbjct: 128 NGNNAPIKNGVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTKSALPKKEASK 187
Query: 353 NKRPKVQ 373
K PKV+
Sbjct: 188 KKNPKVK 194
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 591 RVVTRRLPHVKTLR--FDPETNLGAVRTVTSSPRSVRKIRAYFFNVI 457
RVV R V+ +R FD + ++G V T ++P SVR +A N I
Sbjct: 896 RVVGRNGSTVENIRTQFDVKIDIGDVSTEETTPVSVRGAKADVENAI 942
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 5.1
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +2
Query: 188 ASTLTKQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPK 367
++T TK+ +D + + TPRK RK + S DK++ QN R
Sbjct: 93 SNTPTKKKKDSFDHASVTSLHRRSLSSNTSTPRKYHSRKPYSEPSVIDKEHLQN---RVS 149
Query: 368 VQTGDPKLDLFTTY 409
+ T + DL+ +Y
Sbjct: 150 IGTTHTQNDLYQSY 163
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 106 PNSVRNILFNIIVLSNNFIIHFSFPLKC 189
P V+N +F I N HFSFP+KC
Sbjct: 85 PECVKNEIFKIPPPLNE---HFSFPVKC 109
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 209 DGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGAS-KADKKNE 343
DG D+ G + EA + + RKP K+ +S K KKN+
Sbjct: 8 DGASMDELAGKSYEALLYLMNKNKKRKPEKKDDKEKSSKKVQKKNK 53
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 230 RQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQN 349
R+G E +D +P++ RK ++K + D +E++
Sbjct: 69 REGFIVEDEEDEVPQEIRRKKKRKKHAESTADQDMLDEED 108
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 200 TKQDGCRYDQRQGA--TEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNK 358
TK D +++ Q +E ++ P K R+PSK S + + + N+Q ++
Sbjct: 20 TKNDYLEWERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRKNILNDQKKDE 74
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +2
Query: 377 GDPKLDLFTTYQPWVIQTYGDQAKTKTITLKKYAR-ILRTLRGEEVTVRTAPRFVSGSKR 553
G P +F Y P ++ ++ D+ + K A+ +L L V R P +S
Sbjct: 88 GTPSEVVFLPYLPTILDSFSDRGEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDD 147
Query: 554 RVFTWGSRLVTTRTGGQYCVS 616
W S++ + G S
Sbjct: 148 SSIKWPSKVAALQLLGSLASS 168
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = +2
Query: 248 EATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPK 367
+A Q A+P++ + S S D++ Q++ ++PK
Sbjct: 199 QAGQKAVPQEPQANQQETSSNQEESSFDRQETQDDKQKPK 238
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -3
Query: 329 RLWMRRPSICVWTAFAGSSPG 267
R W R PS W F G PG
Sbjct: 315 RHWDRSPSSIEWGVFKGGEPG 335
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 549 FDPETNLGAVRTVTSSPRSVRKIRAYF 469
FD ET AVR + +S RKIR F
Sbjct: 56 FDSETTAMAVRKLNNSELGPRKIRVEF 82
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +2
Query: 221 YDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPK----VQTGDPK 388
Y + ++ D + + P +++ + S+ KN+ + N+R K + TG P
Sbjct: 643 YKAAERGQQDKHNDVLVDLNPNVEAEKSNPHSNSQKTSKNDMSRNQRNKYAKEIMTGQPT 702
Query: 389 L 391
L
Sbjct: 703 L 703
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 604 LSAGSRRNQAASPRKNPSL 548
L+ GSR+++ + P KNPSL
Sbjct: 546 LNDGSRQHRPSRPSKNPSL 564
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 278 TPRKPSKRKSTAGASKADKKNEQNNNKRPKVQ-TGD-PKL 391
+P PS+RK + A +K + + +PKV T D PK+
Sbjct: 26 SPPLPSRRKGKSALRSALEKKNRKSKSKPKVTITSDTPKV 65
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 257 QDAIPEKTPRKPSKRKST 310
+D +P K+PR+PS ST
Sbjct: 87 RDGLPSKSPRRPSVSAST 104
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 9.0
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = -2
Query: 624 HYN--DTQYCPPVRVVTRRLPHVKTLRFDPETNLGAVRTVTSSPRSVRKIRAYFFNVIVL 451
HY+ +T+ P V + RR PH K +RF TNL +S S+ +L
Sbjct: 267 HYSHAETRKSPVVDGIVRRNPHGKEIRF--ITNLSEEEKNMASKISI-AFEQPVCGFDLL 323
Query: 450 VFAWSPYVCITQGWYVVNKSS 388
+ YV GW V ++
Sbjct: 324 RVSGQSYVIDVNGWSFVKDNN 344
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 284 RKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPK 388
+K SKR++T S+ +KK ++ K+ + +P+
Sbjct: 5 KKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQ 39
>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
assembly of the V-ATPase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 52 SVFPRRELRTTIRLVTLNPNSVRNILFNII 141
S+ P RE ++ +RL+ +++ NILF ++
Sbjct: 68 SMDPEREKKSELRLMKNQISAIINILFTVV 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,520
Number of Sequences: 5004
Number of extensions: 44410
Number of successful extensions: 173
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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