Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20370
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0646 - 5219358-5219377,5219718-5220459,5220749-5221072 34 0.080
12_02_0869 - 23844378-23844689,23844924-23845233,23845322-238454... 32 0.32
11_06_0175 + 20926022-20926145,20926285-20926640,20926930-209276... 32 0.43
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 31 0.57
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 31 0.75
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141... 31 0.99
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 30 1.3
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605... 30 1.3
07_01_1023 + 8840754-8842988,8843189-8843362 30 1.7
04_04_0973 + 29825057-29825344,29825447-29825552,29825750-298258... 30 1.7
01_05_0157 + 18699566-18699853,18699956-18700061,18700268-187007... 29 2.3
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 29 3.0
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886... 29 4.0
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 28 5.3
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 28 5.3
06_01_0948 - 7306108-7306389,7306485-7306702,7307335-7307371 28 5.3
02_04_0384 + 22513204-22513240,22513872-22514089,22514185-22514496 28 5.3
03_01_0222 - 1756769-1756801,1756889-1756917,1756975-1757859,175... 28 7.0
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 28 7.0
01_07_0375 - 43152161-43152262,43152556-43152664,43153433-431535... 28 7.0
04_01_0363 + 4754650-4755912 27 9.2
03_03_0100 + 14411807-14412100 27 9.2
03_01_0078 - 635026-635252,635853-635934,636081-636089 27 9.2
01_06_1779 - 39823149-39823216,39823564-39823747,39823888-398240... 27 9.2
>11_01_0646 - 5219358-5219377,5219718-5220459,5220749-5221072
Length = 361
Score = 34.3 bits (75), Expect = 0.080
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 239 ATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQ 412
A + A P ++ + R+S + + KK ++N+NK + DP +D+F Q
Sbjct: 184 APRRSIDSAAPRRSIDSAAPRRSIDSTASSSKKRKKNSNKLKNTLSSDPFMDVFANVQ 241
>12_02_0869 -
23844378-23844689,23844924-23845233,23845322-23845447,
23845522-23845727,23845832-23845964,23846045-23846208,
23846856-23846948,23847074-23847196,23847318-23847384,
23847473-23847564,23847667-23847779,23847796-23847845,
23848098-23848189
Length = 626
Score = 32.3 bits (70), Expect = 0.32
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 433 RRPGKNQDDYIKKIRADLAYATRRGGNSSDSSKIRFWVKAKGFYVGKPPGYDANRRTVL 609
R PG Y+K++ D Y R G + + I W K+ F PG D+ +R V+
Sbjct: 247 RHPGYIHTSYLKELWPDSLYTYRLGHRLPNGTHI--WSKSYSFKASPYPGQDSVQRVVI 303
>11_06_0175 +
20926022-20926145,20926285-20926640,20926930-20927671,
20928012-20928031
Length = 413
Score = 31.9 bits (69), Expect = 0.43
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 230 RQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTY 409
R+ A + +I TPR+ STA +SK K +++NNK + DP +D+F
Sbjct: 238 RRSIDSAAARRSIDSATPRRSID--STASSSK---KRKKDNNKLKNTLSSDPFMDVFANV 292
Query: 410 Q 412
Q
Sbjct: 293 Q 293
>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 433 RRPGKNQDDYIKKIRADLAYATRRGGNSSDSSKIRFWVKAKGFYVGKPPGYDANRRTVL 609
R PG ++K++ D Y R G D + I W K+ F PG D+ +R V+
Sbjct: 834 RDPGYIHTSFLKELWPDSLYTYRLGHRLLDGTHI--WSKSYSFRASPYPGQDSVQRVVI 890
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = +2
Query: 239 ATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQ 412
A + A P + + R+S + + KK ++++NK + DP +D+F Q
Sbjct: 222 APRRSIDSAAPRRIIDSAAPRRSIDSTASSSKKRKKDSNKLKHTLSSDPFMDVFANVQ 279
>04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,
1419174-1419634,1419683-1419999,1420114-1420477
Length = 948
Score = 30.7 bits (66), Expect = 0.99
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +2
Query: 269 PEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQPWVIQTYGDQAK 448
P++ P KRK K D+ +Q + + P T DP + L P+ +Y D K
Sbjct: 873 PKRHVVLPGKRKIVGVEDKTDEDYDQFDGQPPFTVTIDPSILLSNKDTPY---SYSDH-K 928
Query: 449 TKTITLKKYAR 481
TI +KY R
Sbjct: 929 EGTIVRRKYVR 939
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +2
Query: 230 RQGATEEATQDAIPEKTPRKPSKRKSTAGASKADK-----KNEQNNNK 358
R GA + A +D ++ +K K K K DK K+EQNNNK
Sbjct: 468 RDGAPDVAKEDKKSDRHEKKKRKEKDKHKEKKRDKEAKKEKDEQNNNK 515
>01_06_1105 -
34559694-34559852,34560298-34560312,34560451-34560522,
34560695-34561549
Length = 366
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/102 (21%), Positives = 41/102 (40%)
Frame = +1
Query: 316 RIQSRQEKRTEQQQKA*SANRRP*TRFVHDVPALGDTNVRRPGKNQDDYIKKIRADLAYA 495
R Q R K E ++ + + + V L + NVR + + DY+ R++L
Sbjct: 265 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLKRQKESDYLHYTRSNLVME 324
Query: 496 TRRGGNSSDSSKIRFWVKAKGFYVGKPPGYDANRRTVLCVVI 621
S +S I W +++G Y N+ + V++
Sbjct: 325 NIEIHRSLINSNIIIWYDELYYFIGSVSSY--NQEVFVMVIV 364
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = +2
Query: 185 NASTLTKQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRP 364
NAS+ T + D E D+IP K + + T+ S NE NNN
Sbjct: 96 NASSQTLPNEPNCDTSSDKLPEEASDSIPSKKLIIKAAQHYTSSISTGGLCNEANNNTSS 155
Query: 365 KVQTGDPKLD 394
K T + D
Sbjct: 156 KTLTNESNCD 165
>04_04_0973 +
29825057-29825344,29825447-29825552,29825750-29825845,
29826335-29826690,29826980-29827721,29828064-29828083
Length = 535
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 230 RQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTY 409
R+ A + +I TPR+ STA +SK KK+ +NK + DP +D+F
Sbjct: 360 RRSIDSAAARRSIDSATPRRSID--STASSSKKRKKD---SNKLKNTLSSDPFMDVFANV 414
Query: 410 Q 412
Q
Sbjct: 415 Q 415
>01_05_0157 +
18699566-18699853,18699956-18700061,18700268-18700712,
18700852-18700880,18701014-18701207,18701497-18702211,
18702552-18702571
Length = 598
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +2
Query: 230 RQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTY 409
R+ A + +I TPR+ STA +SK KK+ +NK + DP +D+F
Sbjct: 423 RRSIDSAAARRSIDSATPRQSID--STASSSKKRKKD---SNKLKNTLSSDPFMDVFANV 477
Query: 410 Q 412
Q
Sbjct: 478 Q 478
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 245 EEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGD 382
++ T+ E + PSK K TA + D + E + NK+ K + D
Sbjct: 32 KQKTESKEQEGGQQAPSKNKKTADNEEHDGEQEPSKNKKLKAEESD 77
>04_04_0666 +
27086568-27086975,27087073-27087477,27088542-27088635,
27088731-27088768,27088853-27088999,27089167-27089266,
27090001-27090953,27091512-27091569,27092904-27093022
Length = 773
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +2
Query: 176 SR*NASTLTKQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNN 355
SR ++ +++ G R Q+ A ++++ PEK + S R+ D K +NN
Sbjct: 11 SRSSSQKSSRRSGSRRSQKS-AGQQSSPTVFPEKKGKSKSSRQKHLVFDNKDSKKAKNNE 69
Query: 356 KRPKV 370
++ V
Sbjct: 70 QKNDV 74
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 227 QRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDP 385
+++GAT+ A D KT R+P +R + A AS+ + ++ + K G P
Sbjct: 4 RKKGATKNALGDPASTKTSRQP-RRAAQAAASEKKVNDLITSSAKKKKSVGAP 55
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 479 RILRTLRGEEVTVRTAPRFVS---GSKRRVFTWGSRLVTTR 592
R++ L+G+ +A ++ + G+ VFTWG RLVT R
Sbjct: 340 RMVEYLKGKAFKCVSAAKYHTVALGTDGEVFTWGHRLVTPR 380
>06_01_0948 - 7306108-7306389,7306485-7306702,7307335-7307371
Length = 178
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +2
Query: 212 GCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPK 388
G DQ Q E+ D + + T A +K + NNK +QTG K
Sbjct: 51 GVHSDQNQSGDSESEYDPLKDDTGEGDLIDDENAKQCSKEKTRKNCNNKTSSIQTGGVK 109
>02_04_0384 + 22513204-22513240,22513872-22514089,22514185-22514496
Length = 188
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/59 (27%), Positives = 22/59 (37%)
Frame = +2
Query: 212 GCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPK 388
G DQ Q E+ D + + T A +K + NNK +QTG K
Sbjct: 51 GVHSDQNQSGDSESEYDPLKDDTGEGDLIDDENAKQCSKEKTRKNCNNKTSSIQTGGVK 109
>03_01_0222 -
1756769-1756801,1756889-1756917,1756975-1757859,
1758244-1759273,1759354-1759401,1759626-1760480
Length = 959
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 148 SNNFIIHFSFPLKCVNTNKTR 210
S +F++ F P+KC+NT + R
Sbjct: 437 SLDFVLEFFLPMKCINTEEQR 457
>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 257 QDAIPEKTPRKPSKRKSTAGASKADKKNEQNN--NKRPKVQTGDPKLDLFTTYQPWVIQT 430
+D + E+TP + A++ D ++ N+ KRPKV PKL + + V +T
Sbjct: 843 EDNMIEETPGCSTPAVIIRSAAECDAQDVTNDPKKKRPKVAKSSPKLSKPASERQEVKRT 902
Query: 431 YGDQAKTKTITLKK 472
+ + T KK
Sbjct: 903 SAKKTSGASTTAKK 916
>01_07_0375 -
43152161-43152262,43152556-43152664,43153433-43153504,
43153690-43153834,43153930-43154085,43154557-43154618,
43154695-43155020
Length = 323
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 559 NPSL*PRNESWSCPNCYLL 503
NP+L P + S SCPN +LL
Sbjct: 44 NPTLPPNSSSSSCPNSFLL 62
>04_01_0363 + 4754650-4755912
Length = 420
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 197 LTKQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNN 355
LT DG D+R+GATE Q A ++ K K K T G + ++ E+ N
Sbjct: 132 LTGGDGD--DRRRGATEGGRQAADGDRDDLKNEKEKITEG-ERGHRRRERRPN 181
>03_03_0100 + 14411807-14412100
Length = 97
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +2
Query: 188 ASTLTKQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKR 361
AS+ GCR GA E A+ + P P KR++ G + EQ+ +R
Sbjct: 25 ASSAAAAAGCRTPGGGGAREGGRGAAVAGECPGAPRKRRAAPG--PVSQMQEQHRQRR 80
>03_01_0078 - 635026-635252,635853-635934,636081-636089
Length = 105
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 PEKTPRKPSKRKSTAGASKADKKNEQNNNKRPK 367
P K +KP K++ K +KK E+ K+ K
Sbjct: 72 PAKEEKKPEKKEEKKEEKKEEKKEEKKEEKKGK 104
>01_06_1779 -
39823149-39823216,39823564-39823747,39823888-39824067,
39824490-39824495
Length = 145
Score = 27.5 bits (58), Expect = 9.2
Identities = 21/83 (25%), Positives = 30/83 (36%)
Frame = +2
Query: 281 PRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQPWVIQTYGDQAKTKTI 460
P P K K +K+N N +V+ G K Q W +T D+ K I
Sbjct: 54 PANPYNYKKCVVRVKGEKENANANANAVRVRKGGRKQQYLNEQQKWKPKTAVDEDLYK-I 112
Query: 461 TLKKYARILRTLRGEEVTVRTAP 529
+ K R+ + E R P
Sbjct: 113 SPKLICRVKKAKEVAEEFARRVP 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,775,741
Number of Sequences: 37544
Number of extensions: 298868
Number of successful extensions: 1013
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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