Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20370
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.13
AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical ... 33 0.13
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical p... 31 0.67
Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z72516-1|CAA96687.2| 156|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical pr... 30 1.2
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80839-6|AAB37917.2| 301|Caenorhabditis elegans Hypothetical pr... 29 2.1
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 29 2.1
AC024771-2|AAK70659.1| 697|Caenorhabditis elegans Hypothetical ... 29 2.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 3.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 3.6
U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical pr... 28 4.8
U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical ... 28 4.8
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 28 4.8
Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical pr... 28 6.3
U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g ... 28 6.3
Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical pr... 27 8.3
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 8.3
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 8.3
>AC024763-9|AAU20836.1| 404|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7b protein.
Length = 404
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 290 PSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLF 400
P RKS + K DKK + +N+R + + GD K + F
Sbjct: 358 PIDRKSRTNSDKYDKKRAKKSNRRDRSRFGDEKFEFF 394
>AC024763-8|AAK93863.1| 480|Caenorhabditis elegans Hypothetical
protein Y39A3CL.7a protein.
Length = 480
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 290 PSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLF 400
P RKS + K DKK + +N+R + + GD K + F
Sbjct: 434 PIDRKSRTNSDKYDKKRAKKSNRRDRSRFGDEKFEFF 470
>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
protein F11E6.7 protein.
Length = 1011
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 224 DQRQGATEEATQDAI---PEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLD 394
D+R TEEA ++ I P KTPR PS + G + + KR +V G+ L
Sbjct: 548 DKRLSDTEEAIEENIVKSPPKTPRTPSILR--VGKRMSTSSSPMTERKRNRVHFGEESLP 605
Query: 395 LFTTYQP 415
+ P
Sbjct: 606 VDVVSSP 612
>Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 31.1 bits (67), Expect = 0.67
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 356 CCCSVRFSCRLWMRRPSI 303
CC S +F C++WM++P I
Sbjct: 337 CCASRKFGCKVWMKQPII 354
>Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 31.1 bits (67), Expect = 0.67
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 356 CCCSVRFSCRLWMRRPSI 303
CC S +F C++WM++P I
Sbjct: 337 CCASRKFGCKVWMKQPII 354
>Z72516-1|CAA96687.2| 156|Caenorhabditis elegans Hypothetical
protein T25G3.1 protein.
Length = 156
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 278 TPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTG 379
T +KP+KR + A+ ++K ++ N PKVQ G
Sbjct: 111 TFKKPTKRAGDSAAADEEEKKKKKNAPLPKVQKG 144
>Z46933-4|CAA87037.1| 452|Caenorhabditis elegans Hypothetical
protein F34H10.4 protein.
Length = 452
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 350 NNKRPKVQTGDPKLDLFTTYQPWVIQTYGDQAKTKTI 460
N+ +P Q D D T Y PW I+ + ++ K +
Sbjct: 125 NHDQPAEQPSDKSTDDSTGYPPWAIEAFNSESNIKNV 161
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 233 QGATEEATQDAIPEKTPRKPSKRKSTAGA-SKADKKNEQNNNKRPKVQT 376
+ A++ AT+ KTP+ PSK S+A A S++ + N R T
Sbjct: 59 RSASKSATRGRTASKTPKTPSKTPSSASARSRSRSRGRPTNASRLSAST 107
>U80839-6|AAB37917.2| 301|Caenorhabditis elegans Hypothetical
protein ZC204.8 protein.
Length = 301
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 40 IAFRSVFPRRELRTTIRLVTLNPNSVRNILFNIIVLS-NNFIIHFSFPLKCVNTNKTRWL 216
++ S FP +L T L + VR L ++++L+ ++F I +SFP K +N +W+
Sbjct: 175 LSVSSRFPTPKLILTAGFKHLELHHVRVTLHDLLLLNCSHFTIFYSFPEKDLNLFLKQWI 234
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Frame = +2
Query: 239 ATEEATQDA----IPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKV 370
AT E ++D+ +TP+KP RKS+A +S + K+++ + + +V
Sbjct: 1211 ATAETSEDSEVKPYQPQTPKKPESRKSSAKSSASSKRSKIPSTSQSRV 1258
>AC024771-2|AAK70659.1| 697|Caenorhabditis elegans Hypothetical
protein Y40B10A.4 protein.
Length = 697
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 191 STLTKQDGC-RYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKN 340
S L K D RYD + + +PE P + S++ S AS ADKK+
Sbjct: 312 SVLQKNDVFKRYDYKDYKENGDDFNKLPENPPVRDSRKPSRFSASHADKKH 362
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 242 TEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQPWV 421
TEEA ++++ EK +K K+K+ S +K++ + +T + +L
Sbjct: 13625 TEEAPKESVDEKPKKKVLKKKTEKSDSSISQKSKSAKSTVDAAETLESDFNLVEKKTVQK 13684
Query: 422 IQTYGDQAKTKTI 460
++ D++ + TI
Sbjct: 13685 VEQSPDESTSATI 13697
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/73 (21%), Positives = 35/73 (47%)
Frame = +2
Query: 242 TEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQPWV 421
TEEA ++++ EK +K K+K+ S +K++ + +T + +L
Sbjct: 13625 TEEAPKESVDEKPKKKVLKKKTEKSDSSISQKSKSAKSTVDAAETLESDFNLVEKKTVQK 13684
Query: 422 IQTYGDQAKTKTI 460
++ D++ + TI
Sbjct: 13685 VEQSPDESTSATI 13697
>U58753-8|AAC24439.1| 633|Caenorhabditis elegans Hypothetical
protein W03B1.9 protein.
Length = 633
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 242 TEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGD 382
T + T A PE+ P P + S NEQNNN Q G+
Sbjct: 588 TIQTTATASPERLPAPPGNPPARVAPSSL---NEQNNNDNGPTQNGN 631
>U58753-7|AAC24433.1| 581|Caenorhabditis elegans Hypothetical
protein W03B1.5 protein.
Length = 581
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 242 TEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGD 382
T + T A PE+ P P + S NEQNNN Q G+
Sbjct: 536 TIQTTATASPERLPAPPGNPPARVAPSSL---NEQNNNDNGPTQNGN 579
>AF067216-1|AAC17524.1| 301|Caenorhabditis elegans Hypothetical
protein C35E7.9 protein.
Length = 301
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 224 DQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQ-TGDPKLDL 397
D ++ +++A + ++ +K K++ K D+K E + PK T DP DL
Sbjct: 143 DDKKSGSKDAEKKEEKKEEEKKEEKKEEKKEEKKEDEKKEDEKKEEPKPHITIDPPGDL 201
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 275 KTPRKPSKRKSTAGASKADKKNEQNNNKRPK 367
K+P K +R+ST S+ DKK +++ K K
Sbjct: 7 KSPEKVERRRSTQEDSEKDKKRSRDDRKTEK 37
>Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical
protein F13B12.1 protein.
Length = 511
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 284 RKPSKRKSTAGASKADKKNEQNNNKRPKVQTGD 382
R P KRK + ++ N+ + KRP+++ D
Sbjct: 393 RMPEKRKKKINSRDEEEPNDDDQPKRPRIRDAD 425
>U46669-3|AAA85744.2| 737|Caenorhabditis elegans Regulator of g
protein signalingprotein 6 protein.
Length = 737
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/65 (21%), Positives = 33/65 (50%)
Frame = +2
Query: 287 KPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQPWVIQTYGDQAKTKTITL 466
+PSK + + SK +KK + +++ K++ + +T P ++T + ++T L
Sbjct: 555 EPSKNRLSIFKSKTEKKVVKPESEKEKLKPRSDDIPTTSTSTPMAVETKPNGSRTTEEPL 614
Query: 467 KKYAR 481
K+ +
Sbjct: 615 KRMGK 619
>Z99279-6|CAB16498.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +2
Query: 359 RPKVQTGDPKLDLFTTYQPWVIQTYGDQAKTKTITLKKYARILRTLRGEEVTVRTAPRFV 538
+ +V P + F T+QPW G A I ++++ + V +R A +
Sbjct: 19 KSQVIVQSPNISTFGTWQPWARCPEGQYANGMRIKFEEWSEDVEIAGLTAVDLRCAAKGG 78
Query: 539 SGSKRRVFTWGSRLVTTRTGGQYC 610
S+ V + G + T QYC
Sbjct: 79 PHSEESVIS-GESVSGTWQNVQYC 101
>Z82284-8|CAB05294.1| 640|Caenorhabditis elegans Hypothetical
protein Y57G11A.2 protein.
Length = 640
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +2
Query: 359 RPKVQTGDPKLDLFTTYQPWVIQTYGDQAKTKTITLKKYARILRTLRGEEVTVRTAPRFV 538
+ +V P + F T+QPW G A I ++++ + V +R A +
Sbjct: 19 KSQVIVQSPNISTFGTWQPWARCPEGQYANGMRIKFEEWSEDVEIAGLTAVDLRCAAKGG 78
Query: 539 SGSKRRVFTWGSRLVTTRTGGQYC 610
S+ V + G + T QYC
Sbjct: 79 PHSEESVIS-GESVSGTWQNVQYC 101
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 257 QDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQPW 418
+D + +K+ ++ K K +K DKK ++ NK+ K + D D + W
Sbjct: 266 EDVMKKKSKKEKKKEKKEKRKNK-DKKKDKKKNKKSKSRETDDDSDGSDSEDDW 318
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 257 QDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTTYQPW 418
+D + +K+ ++ K K +K DKK ++ NK+ K + D D + W
Sbjct: 266 EDVMKKKSKKEKKKEKKEKRKNK-DKKKDKKKNKKSKSRETDDDSDGSDSEDDW 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,070
Number of Sequences: 27780
Number of extensions: 255303
Number of successful extensions: 1198
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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