Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20370
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35670.1 68415.m04375 transcription factor, putative / fertil...    31   0.83 
At3g08020.1 68416.m00979 PHD finger protein-related contains low...    30   1.4  
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    29   2.5  
At4g35940.1 68417.m05113 expressed protein                             28   4.4  
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    28   5.8  
At5g10470.1 68418.m01213 kinesin motor protein-related TH65 prot...    28   5.8  
At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsi...    28   5.8  
At3g25805.1 68416.m03212 expressed protein                             27   7.7  
At1g31814.1 68414.m03906 expressed protein                             27   7.7  
At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative ...    27   7.7  

>At2g35670.1 68415.m04375 transcription factor, putative /
           fertilization-independent seed 2 protein (FIS2)
           identical to GB:AF096095
          Length = 632

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 233 QGATEEATQDAIPEKTPRKPSK--RKSTAGASKADKKNEQNNNKRPKVQTGDPKLDLFTT 406
           Q A  E+++  +P       S   R  ++  +K+ +KN  N    PK ++     D+ TT
Sbjct: 325 QPAIAESSEPKVPHVNDENVSSTPRAHSSKKNKSTRKNVDNVPSPPKTRSSKKTSDILTT 384

Query: 407 YQPWVIQT 430
            QP + ++
Sbjct: 385 TQPTIAES 392


>At3g08020.1 68416.m00979 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 764

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 532 SWSCPNCYLL-AA*RTQDPRVFF*CNRLGFCLVAVRLY--HP 416
           SWSCP+C +     RT DP  F  C R   C  A   Y  HP
Sbjct: 194 SWSCPSCRVCEVCRRTGDPNKFMFCKR---CDAAYHCYCQHP 232


>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
            protein / MATH domain-containing protein contains Pfam
            profile PF00917: MATH domain
          Length = 898

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
 Frame = +2

Query: 209  DGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGA-----SKADKKNEQNNNKRPKVQ 373
            DGCR  Q +   +   Q     K      K KSTA       + +D K E    K     
Sbjct: 749  DGCRIQQLEEHVKNLEQTVSDLKVEMDKEKAKSTAKVLSLEDTLSDLKTELGKEKAKNAT 808

Query: 374  TGDPKLDLFTTYQPWVIQTYGDQAKTKTITLK 469
              D  L L  TY    ++   ++AK+ +   K
Sbjct: 809  ATDKFLLLKDTYSDLKVELEKEKAKSTSAAAK 840


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +2

Query: 203 KQDGCRYDQRQGATEEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQNNNKRPKVQTGD 382
           K++  R D+R    ++  +    EK  +K  KRK   G    +  +E+ ++KR + + G 
Sbjct: 35  KKEQRRKDRRSDKKDKKDKKERKEKKEKKEKKRKEREG---KEVGSEKRSHKRRRKEDG- 90

Query: 383 PKLDLF 400
            K+DLF
Sbjct: 91  AKVDLF 96



 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 286 KAVQTQIDGRRIQSRQEKRTEQQQ 357
           K VQ  +DGR   +  EKR E+QQ
Sbjct: 141 KEVQQPLDGRHNNNNNEKRVEKQQ 164


>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 269 PEKTPRKPSKRKSTAGASKADKKNE-QNNNKRPK 367
           P+K   K +K K+     K+++K +  NN+K+PK
Sbjct: 95  PKKEKEKENKNKNDEDKKKSEEKKKPDNNDKKPK 128


>At5g10470.1 68418.m01213 kinesin motor protein-related TH65
           protein, Arabidopsis thaliana, EMBL:AJ001729; contains
           Pfam profile PF00225: Kinesin motor domain
          Length = 1273

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 238 GYGRSYSR-RDPGEDPAKAVQTQIDGRRIQSRQEKRTE 348
           G  +S SR   PG  P + + TQI G ++  + E+R +
Sbjct: 831 GRSKSTSRGSSPGRSPVRYLDTQIHGFKVNIKAERRNK 868


>At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsis
           hypothetical protein PID:e326839 (gb|Z97337) contains
           transmembrane domains
          Length = 416

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -2

Query: 576 RLPHVKTLRFDPETNLGAVRTVTSSPRSVRKIRAYFFNVIVLVFAWSPYVCITQGWYVV 400
           + P +  LR   + +L  + T+TS P   + +R +   V + V  WS Y+    GW ++
Sbjct: 10  KTPAISGLREKHQQDLEKL-TLTSQP--FKTLRLFVVAVFLYVRRWSSYLLANVGWLIL 65


>At3g25805.1 68416.m03212 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 395 LFTTYQPWVIQTYGDQAKTKTITLKKYARIL 487
           L+T +QPW+I       K   I L KY R +
Sbjct: 286 LYTIFQPWLIGENLQNVKKNKIELVKYLRFV 316


>At1g31814.1 68414.m03906 expressed protein
          Length = 473

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +2

Query: 245 EEATQDAIPEKTPRKPSKRKSTAGASKADKKNEQN---NNKRPKVQTG 379
           EE  ++ + E   +K  ++++T   S A+ +  Q    +NKRP+V  G
Sbjct: 339 EEKLEECVKELEDQKAQRKRATKFNSPANPQQPQEQKVDNKRPRVANG 386


>At1g17280.1 68414.m02105 ubiquitin-conjugating enzyme, putative
           similar to ubiquitin conjugating enzyme 6 from [Homo
           sapiens] GI:14029267, [Mus musculus] GI:14029263;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 237

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
 Frame = +2

Query: 218 RYDQRQGATEEATQDAIPEKTPRKPSKRKS------TAGASKADKKNEQNNNKR 361
           +Y+Q+Q A +  TQ   PE   +  +K +S      T G S+   K  + NNK+
Sbjct: 159 KYNQQQLAEQATTQLTTPESPQKSDTKVESEKTIDPTKGDSEGGLKERKKNNKQ 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,485
Number of Sequences: 28952
Number of extensions: 236474
Number of successful extensions: 853
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)