Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20369
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 4.0
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 4.0
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 5.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.2
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 9.2
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 25 9.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.2
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.2
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 9.2
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 40 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 219
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 220 TEKTQKSLFDGM 255
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 224 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 93
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 541 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 681
HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 261 TSHTVE*RLLGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 127
TS ++ G ++G +S +LFIGVD G+ F LQ
Sbjct: 377 TSQVID--FFGEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 392 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 487
++HD G S + DR + K++ +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 419 ILFFRRRVLHLSLVEVFNSVQEVL 348
I++ + + LHL LV +FN E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +3
Query: 699 WQHCLGNGRRTATPGFYSNPNVSHAF 776
W +C GN P + S P+ S+ F
Sbjct: 116 WNYCQGNSSDYTNPTYCSTPSPSYYF 141
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 480 IENFDPTKLNTRKRARRTRSPQRTSLSKRNQLEPLLYNSYSQMYLASIAV 629
IEN P ++N R R + + R+SLS + L P+L+ L I V
Sbjct: 1982 IENLLPYEINLRIIERSSGNDWRSSLSPGDSL-PILHTDSKSFLLMGINV 2030
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 233 WVFSVATSSADGSTIFSLVSTSRRQL 156
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 236 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 138
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,746
Number of Sequences: 5004
Number of extensions: 64900
Number of successful extensions: 260
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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