Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20369
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 63 3e-10
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.028
SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0) 33 0.20
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 31 0.79
SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1) 31 0.79
SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01) 25 1.7
SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 30 1.8
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 1.8
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.4
SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4) 30 2.4
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6) 29 3.2
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087) 29 3.2
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 29 3.2
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 5.6
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 29 5.6
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 5.6
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 7.4
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1) 28 7.4
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 7.4
SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_7966| Best HMM Match : DNA_ligase_A_C (HMM E-Value=4.8) 28 9.8
SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3) 28 9.8
SB_15442| Best HMM Match : rve (HMM E-Value=0.00084) 28 9.8
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 62.9 bits (146), Expect = 3e-10
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +3
Query: 231 PEVF--IRRYEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 404
PEV + FD+S+LKH E QEKNPLP KD + E V+ FD +++KH
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQ 731
Query: 405 TEEKNPL 425
TEEKNPL
Sbjct: 732 TEEKNPL 738
Score = 61.7 bits (143), Expect = 6e-10
Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = +3
Query: 231 PEVFIRRYE--KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 404
PEV R E KFD+S+LKH ET+EK +P KDV+ AE V+ FD +++KH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVV 579
Query: 405 TEEKNPL 425
T+EKNPL
Sbjct: 580 TQEKNPL 586
Score = 60.9 bits (141), Expect = 1e-09
Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +3
Query: 231 PEVFIRRYE--KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTT 404
P+ F R E F+ S+L+H ET+EKN LP KD +A EK GVE F K ++KH
Sbjct: 445 PDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVE 503
Query: 405 TEEKNPL 425
T EKNPL
Sbjct: 504 TLEKNPL 510
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +3
Query: 255 EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPL 425
+ FD S+LKH ET EKNPLP V+ E + L D V FD +++KH +EKNPL
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPL 702
Score = 54.4 bits (125), Expect = 1e-07
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +3
Query: 255 EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLX 428
+ FD S+LKH TQEKNPLP + E +N D V FD T++KH TT+EK+ +
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627
Query: 429 XXXXXXXXXXXNKFLNGIENFDPTKLNTRKRARRTRSPQRTSLSKRNQLEPL 584
++ +++FD +KL + + P L + + E L
Sbjct: 628 SQEDIKEEAVDSR--AEVKSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVL 677
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 KFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEKNPLXX 431
KFD++ LKH +T+EKN LP + + E D V+ F+K++++H T+EKN L
Sbjct: 416 KFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPT 475
Query: 432 XXXXXXXXXXNKFLNGIENFDPTKL 506
F +G+E F KL
Sbjct: 476 KDTIADEKRTAPF-SGVEVFQKNKL 499
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +3
Query: 255 EKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLD--GVEHFDKTQMKHTTTEEK 416
E F ++LKH ET EKNPLPD + AE + L D V FD +++KH T+EK
Sbjct: 492 EVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEK 547
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 261 FDSSQLKHTETQEKNPLPDKDVVAAEKA 344
FD S+LKH +T+EKNPLPD +A EKA
Sbjct: 722 FDHSKLKHVQTEEKNPLPDAKTIAQEKA 749
Score = 36.7 bits (81), Expect = 0.021
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 398 HDDGRKESTAP-DRSYRSGEGKEQIPERH--RELRSH*AEHTETCEKNSLPTKDVIEQEK 568
H ++++T P D + + ++ P+R + +H ET EKN+LPTKD I EK
Sbjct: 424 HVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDTIADEK 483
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +1
Query: 106 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 225
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.79
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 106 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 225
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 398 HDDGRKESTAPD-RSYRSGEGKEQIPERHRELR--SH*AEHTETCEKNSLPTKDVIEQE 565
H + +++ PD ++ R+ E +P+R + + +H ET EK +PTKDVIE E
Sbjct: 501 HVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +3
Query: 312 PDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXXXXXNKFLN--GIE 485
P +V + + + V FD +KH T+EKN L ++F + ++
Sbjct: 396 PGSEVAYVDGGSKPDVSEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVK 455
Query: 486 NFDPTKLNTRKRARRTRSPQRTSLSKRNQLEP 581
+F+ +KL + + P + +++ + P
Sbjct: 456 SFEKSKLQHVETKEKNTLPTKDTIADEKRTAP 487
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 36.3 bits (80), Expect = 0.028
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 94 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFDGMR 258
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+ +
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFENSK 388
>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
Length = 470
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 389 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEHTETCEKNSLPTKDVIEQE 565
D + D E T P R +G+ + RHR+ + A+H+ ++ P+ DVI Q+
Sbjct: 370 DRSQSDSEPEDTTPLRQKGAGKDNSR-KRRHRKKTGNEAQHSAGSDEEDEPSYDVISQD 427
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 24 ESSIPFLIKNILIQNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 158
E S+PF N QN ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_46753| Best HMM Match : Fimbrial_CS1 (HMM E-Value=1.1)
Length = 982
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/94 (14%), Positives = 45/94 (47%)
Frame = +2
Query: 287 RDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQ 466
++ G+ + +++ R E P + L + ++ D+ + +E PD+ + +++
Sbjct: 829 QEQGKPDKNKEKQDREQEKPDKDLEKQYQKQEKPDKGQEKQDREQEKPDKDQEKQDREQE 888
Query: 467 IPERHRELRSH*AEHTETCEKNSLPTKDVIEQEK 568
P++ +E + H E + ++ ++ ++E+
Sbjct: 889 KPDKDQEKQDHEQEKPDKDQEKQDREQEKTDKER 922
>SB_10698| Best HMM Match : bZIP_1 (HMM E-Value=0.01)
Length = 590
Score = 24.6 bits (51), Expect(2) = 1.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 383 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHREL 490
DSD+ +DD +STA R R + + P R L
Sbjct: 281 DSDDDYDDREGDSTAKIRKGRRSDTDDLSPNPRRLL 316
Score = 24.2 bits (50), Expect(2) = 1.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 266 FEPAEAHRDSGEE 304
FEP E H DSG+E
Sbjct: 266 FEPMEIHDDSGDE 278
>SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 498 TKLNTRKRARRTRSPQRTSLSKRNQLEPLLY 590
+K +RKRAR T +P+R LS + ++E + Y
Sbjct: 77 SKAKSRKRARETTAPKRNCLSLKQRVELINY 107
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 288 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
+T E++P DK A +LLDG+ FD+ + +H
Sbjct: 261 KTIEQDPTSDKSYKALRDTTHDLLDGLRDFDQAKEEH 297
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 288 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
+T E++P +K A +LLDG++HF + + +H
Sbjct: 163 KTIEQDPSSEKSYQALRDTTHDLLDGLQHFGQAKEEH 199
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -3
Query: 231 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 88
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 501 KLNTRKRARRTRSPQRTSLSKRNQ 572
K N+RK+ RR R P+ T LSK+ Q
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQ 40
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 76 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 222
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_36280| Best HMM Match : Dehydrin (HMM E-Value=4.4)
Length = 426
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/93 (27%), Positives = 36/93 (38%)
Frame = +2
Query: 209 KTSPLRRPRSLYSTV*EV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDS 388
++S RRPRS + P+ RDS E S + + SPP S S
Sbjct: 32 RSSVDRRPRSSRESPERK--RPSSLGRDSSERRPSARVSSDNSRSPPHRRDSSRRSHSPS 89
Query: 389 DEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 487
+ DD R R R +E+ P R R+
Sbjct: 90 RRSSDD-RSTDARDRRDRRRSSSRERRPPRDRD 121
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -3
Query: 231 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 136
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 416 ESTAPDRSYRSGEGKEQIPERHR 484
+STA D SY SG G E P HR
Sbjct: 483 DSTASDSSYDSGSGPELSPNEHR 505
>SB_13912| Best HMM Match : rRNA_methylase (HMM E-Value=2.6)
Length = 692
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 288 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
+T E++P +K A +LLDG+ +FD+ + +H
Sbjct: 537 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQAKEEH 573
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 288 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 567 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 603
>SB_35592| Best HMM Match : zf-CCHC (HMM E-Value=0.0087)
Length = 556
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 288 ETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
+T E++P +K A +LLDG+ +FD+ +H
Sbjct: 492 KTIEQDPSSEKSYQALRDTTHDLLDGLRYFDQASKEH 528
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 219 H*EDPEVFIRRYEKFDSSQLKHTETQEKNPLPDKDVV 329
H +P+ + +E FDS LKH ++ N +P+ V
Sbjct: 370 HEHEPKQDLYHHEDFDSYSLKHERVKQSNTVPNPSKV 406
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 638 LM*VRSICVVHYKFYFCFCTMATLPG 715
L+ V IC VH FY+C C +++ G
Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80
>SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 498 TKLNTRKRARRTRSPQRTSLSKRNQLEPLLY 590
+K +RKRAR T +P+R LS + +++ + Y
Sbjct: 78 SKAKSRKRARETTAPKRNCLSLKQRVKLINY 108
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 226 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 110
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = -1
Query: 470 EFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQEVL 348
+FVL++LRF +D I ++ + HL+LVE + +Q+ L
Sbjct: 295 DFVLYMLRFSDYD----IYTGKKSIAHLTLVEFESWLQDEL 331
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 595 VTRKCISLVSPYFNIDVSQIDL 660
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 97 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 225
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
Length = 766
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 297 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 75 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 108
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 297 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 173 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 206
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 297 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 222 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 255
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 297 EKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKH 398
E++P +K A +LLDG+ +FD+ + +H
Sbjct: 320 EQDPKSEKSYQALRDTTHDLLDGLRYFDQAKEEH 353
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 41 PHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTP 181
P + + E P P + L P T+ P+ V +ASTP S +P
Sbjct: 517 PRNSFAEYEKPLPTLPLSPTNTTTGRPRLSTVPPEASTPTDSFPKSP 563
>SB_52306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 294
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/71 (25%), Positives = 28/71 (39%)
Frame = +2
Query: 272 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 451
P + HR S + +G+R G+ PE R ++ + E + T G
Sbjct: 75 PEKQHRGSVHKRGNGER----GQGSPEKQQRGSVHKRGNGEGKSSPENQHTGSIYKRGKG 130
Query: 452 EGKEQIPERHR 484
EGK +HR
Sbjct: 131 EGKSSPENQHR 141
>SB_36993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Frame = +2
Query: 278 EAHRDSGEEPA--SGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 451
EA RD +E S R + G R DEA DG E+T +
Sbjct: 73 EATRDGNDEATRDSHDEATRDSQDEAARDGHDEATRDSHDEATRDGHDEATRDSHDEATR 132
Query: 452 EGKEQIPERHRELRSH*AEHTETCEKNSLPTKDVIEQE 565
+G ++ + + + T + + T DV E
Sbjct: 133 DGNDEATRDSHDRATRDSHDRATRDSHDRATLDVTGDE 170
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 287 RDSGEEPASGQRRCRSG-ESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 463
+DS E ++ R G E + + ++ ++ DE DD + D SG+GK+
Sbjct: 795 KDSSESEKGKAKKQRKGREKKGKEIKKNDDEEEERDEEEDDEEDDDEEDDSKKASGKGKK 854
Query: 464 QIPERHRELRSH*AEHTETCEKNSLPTK 547
+ ++ +S + E E++ TK
Sbjct: 855 G-QDNKKKGKSKKDDEDEEAEEDGEKTK 881
>SB_7966| Best HMM Match : DNA_ligase_A_C (HMM E-Value=4.8)
Length = 199
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 477 GIENFD--PTKLNTRKRARRTRSPQ 545
GIE+ D P KL+ RKR RRT S Q
Sbjct: 172 GIEHIDEEPKKLDARKRKRRTISSQ 196
>SB_53576| Best HMM Match : SCAN (HMM E-Value=2.3)
Length = 334
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Frame = +2
Query: 296 GEEPASGQRR----CRSGESPPEPLGRS*T-LRQDSDEAHDDGRK---ESTAPDRSYRSG 451
GEEP+S S + P P+ + + +D D+ +G + ES A DRS+ SG
Sbjct: 181 GEEPSSRTETPDLYILSNDIPTSPVDEAPLPVDEDDDDEQVNGLRMLPESVALDRSHESG 240
Query: 452 EGKEQIP 472
G +P
Sbjct: 241 RGTPHLP 247
>SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)
Length = 822
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Frame = +3
Query: 213 RRH*EDPEVFIRRYEKFDSS---QLKHTETQEKNPLPDKD----VVAAEKAHQNLLDGVE 371
+ H DP FIR Y ++ + L+ + P KD +A EKA + ++DG
Sbjct: 690 KTHKSDPVAFIRGYHEYMTEWEPALEDVYKLMRQPTNIKDPNAVAIAREKADKTVMDGDV 749
Query: 372 HFDKTQMKHTTTEEK 416
+ +Q + T EK
Sbjct: 750 GYQISQEQRPTNCEK 764
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,297,772
Number of Sequences: 59808
Number of extensions: 520257
Number of successful extensions: 1800
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1786
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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