Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20369
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 56 4e-08
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 33 0.23
Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical pr... 30 1.6
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 29 4.9
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 29 4.9
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 6.5
U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon gu... 28 8.6
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 8.6
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 28 8.6
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 8.6
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 28 8.6
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 55.6 bits (128), Expect = 4e-08
Identities = 31/102 (30%), Positives = 46/102 (45%)
Frame = +3
Query: 273 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 452
+LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK L
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 453 XXXNKFLNGIENFDPTKLNTRKRARRTRSPQRTSLSKRNQLE 578
+ + I NF L + + P T +++ L+
Sbjct: 83 KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124
Score = 48.8 bits (111), Expect = 4e-06
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +3
Query: 243 IRRYEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 422
I E FDS++L T +EK LP D + EK H L D + +F +K T T EKN
Sbjct: 51 IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110
Query: 423 L 425
L
Sbjct: 111 L 111
Score = 35.9 bits (79), Expect = 0.032
Identities = 22/53 (41%), Positives = 25/53 (47%)
Frame = +3
Query: 249 RYEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 407
+ F S LK TET EKN LP VA EK L FDK+ + H T
Sbjct: 91 KINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139
Score = 35.1 bits (77), Expect = 0.057
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 136 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD 249
++E F+++ L EKIVLPSA+D+ EK L D
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTD 90
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 91 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 231
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 94 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEK 228
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEK 45
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 33.1 bits (72), Expect = 0.23
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +2
Query: 287 RDSGEEPASGQRRCRSGESPPEPLGRS*TLR-QDSDEAHDDGRKESTAPDRSYRSGEGKE 463
+D + +R+ + S + GR + + + D R +P+RS RS E +
Sbjct: 233 KDKNRKKEKTERKRKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSPERSRRSTETRN 292
Query: 464 QIPERHRELRSH*AEHTE--TCEKNSLPTKDVIEQEK 568
+ PER RS E E + + +++VI++EK
Sbjct: 293 ERPERPSRWRSRSRERKEYDSYRRRRSRSREVIDKEK 329
>Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical
protein F54B8.3 protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = -1
Query: 521 TFPCVQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQ 357
TF + L+ ++V A++ F ++ DR Q I +F+R LH+ VE++NS
Sbjct: 98 TFLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYV 155
Query: 356 EVLVGFLRC 330
+ ++ LRC
Sbjct: 156 DDVMTILRC 164
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 383 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEHTET---CEKNSLPTKDV 553
D+DE H K+S A D + +E +P++ +E++ E E+ S +D+
Sbjct: 127 DTDEEHSSADKKSKAEDEE-EVEDDEEPVPKKKKEVQEEPEEEESVEGEDEEESQEVEDL 185
Query: 554 IEQEK 568
E EK
Sbjct: 186 KEDEK 190
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 278 EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 418
E + E+ + R E PEPL R D DE DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 29 FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 208
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75
Query: 209 KTSPLRR 229
+P+++
Sbjct: 76 TVTPIQQ 82
>U11279-2|AAW88400.1| 714|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform b protein.
Length = 714
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 443 RSGEGKEQIPERHRELRSH*AEHTETCEKNSLPTK---DVIEQE 565
+ GE +E+ PE E SH E E E + LP K D +E+E
Sbjct: 217 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 258
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 443 RSGEGKEQIPERHRELRSH*AEHTETCEKNSLPTK---DVIEQE 565
+ GE +E+ PE E SH E E E + LP K D +E+E
Sbjct: 2389 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 2430
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Frame = +2
Query: 299 EEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGR-----------KESTAPDRSYR 445
E+ AS Q+ E P +P ++ +D DE D +ES++ D R
Sbjct: 393 EDEASAQK-----EKPKKPATKASDADEDDDEESSDEESDEESEDSEESEESSSDDDEDR 447
Query: 446 SGEGKEQIPERHRELRSH*AEHTETCEKN 532
G+ KE + ER ++ A+ E + N
Sbjct: 448 GGQQKETVEERMERIKLRIAKRKEVAQAN 476
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 443 RSGEGKEQIPERHRELRSH*AEHTETCEKNSLPTK---DVIEQE 565
+ GE +E+ PE E SH E E E + LP K D +E+E
Sbjct: 2417 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 2458
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 27.9 bits (59), Expect = 8.6
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 11/89 (12%)
Frame = +2
Query: 299 EEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGR-----------KESTAPDRSYR 445
E+ AS Q+ E P +P ++ +D DE D +ES++ D R
Sbjct: 393 EDEASAQK-----EKPKKPATKASDADEDDDEESSDEESDEESEDSEESEESSSDDDEDR 447
Query: 446 SGEGKEQIPERHRELRSH*AEHTETCEKN 532
G+ KE + ER ++ A+ E + N
Sbjct: 448 GGQQKETVEERMERIKLRIAKRKEVAQAN 476
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,919
Number of Sequences: 27780
Number of extensions: 380471
Number of successful extensions: 1429
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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