Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20369
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    31   0.86 
At2g33793.1 68415.m04145 expressed protein                             30   2.0  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    29   4.6  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   6.0  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    28   8.0  

>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
            Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
            [Bos taurus]
          Length = 897

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +2

Query: 290  DSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQI 469
            +S ++     R  R   SP     R       SDE+ DD +++S++  ++     GK + 
Sbjct: 794  ESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRKNRSPSPGKSR- 852

Query: 470  PERHRELRSH*AEHTETCEKNSL 538
              RH   RS  ++H++   KN+L
Sbjct: 853  -RRHVSSRSPHSKHSQ--HKNTL 872


>At2g33793.1 68415.m04145 expressed protein
          Length = 212

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +2

Query: 374 LRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEHTETCEKNSLPTKDV 553
           L+Q  ++AH+DGRK+      S  S E K +I E   +L       ++   K+S   +++
Sbjct: 47  LQQFREKAHEDGRKKKEESISSV-STEVKSKIDELKSKLEKERQNFSKALSKSSKECENI 105

Query: 554 IEQE 565
           ++ E
Sbjct: 106 LKDE 109


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 76  SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 240
           S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E    S
Sbjct: 78  SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 228 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 109
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 76  SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 228
           S SD+PS  L+D+  ++ +LK  L+G  +     VDTN       AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,849,830
Number of Sequences: 28952
Number of extensions: 357206
Number of successful extensions: 1164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)