Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20367
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   6.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.7  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   8.7  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 366 SKVMLTQSKTNFRIRKNLVLRLL 434
           S+ ML Q+K    IRKNLV + L
Sbjct: 388 SREMLQQNKILKVIRKNLVKKCL 410


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 454  HLCLVVISNLSTKFFLILKLVFD*VSITFELVSRLHS 344
            H+C   I  +  K +    + F  VS + EL+ ++ +
Sbjct: 1014 HVCYATIQEVRAKIYFFYLVKFYKVSKSGELIHKIET 1050


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 454 HLCLVVISNLSTKFFLILKLVFD*VSITFELVSRLHS 344
           H+C   I  +  K +    + F  VS + EL+ ++ +
Sbjct: 295 HVCYATIQEVRAKIYFFYLVKFYKVSKSGELIHKIET 331


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,936
Number of Sequences: 336
Number of extensions: 3080
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)