Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20367
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   0.82 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 357 ETSSKVMLTQSKTNFRIRKNLVLRL 431
           +TSSKVMLT+   N  + +N+ + L
Sbjct: 17  KTSSKVMLTRGTVNDIVSRNITMVL 41


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 596  RPRGRRKMTTSRTSCNQTESQPNVISAQMAA 688
            RP  RR++  + T C+   SQ  VI + M +
Sbjct: 962  RPAYRRRLNVNETVCSDYFSQGGVIESIMVS 992


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 356 STPLVPSTSCHHQQTSQHP 300
           S PLV S   HHQ  +QHP
Sbjct: 160 SPPLVES-QMHHQMHTQHP 177


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 136 GIPVKSNLPSKWLSLVIG 83
           G P+K   P+ WLS+  G
Sbjct: 160 GNPIKDKYPNNWLSVFNG 177


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 378 LTQSKTNFRIRKNLVLRLLMTTR 446
           L  ++TNFRI+  LV  L+  T+
Sbjct: 389 LNSNETNFRIQAGLVDELVRGTK 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,633
Number of Sequences: 438
Number of extensions: 3779
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)